Gene : Seita.4G148400 S. italica v2.2
Defline:  (1 of 1) PTHR12735//PTHR12735:SF6 - BOLA-LIKE PROTEIN-RELATED Genomic Order:  1484
Name:  ? Seita.4G148400 Secondary Identifier:  ? PAC:32709084
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G148400 0.5kb upstream 0.5kb upstream 5021 true scaffold_4: 18470871-18475891 Setaria italica
Seita.4G148400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 18475392-18475891 Setaria italica
Seita.4G148400 0.5kb downstream 0.5kb downstream 5021 true scaffold_4: 18470371-18475391 Setaria italica
Seita.4G148400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 18470371-18470870 Setaria italica
Seita.4G148400 1.0kb upstream 1.0kb upstream 5521 true scaffold_4: 18470871-18476391 Setaria italica
Seita.4G148400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 18475392-18476391 Setaria italica
Seita.4G148400 1.0kb downstream 1.0kb downstream 5521 true scaffold_4: 18469871-18475391 Setaria italica
Seita.4G148400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 18469871-18470870 Setaria italica
Seita.4G148400 2.0kb upstream 2.0kb upstream 6521 true scaffold_4: 18470871-18477391 Setaria italica
Seita.4G148400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 18475392-18477391 Setaria italica
Seita.4G148400 2.0kb downstream 2.0kb downstream 6521 true scaffold_4: 18468871-18475391 Setaria italica
Seita.4G148400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 18468871-18470870 Setaria italica
Seita.4G148400 5.0kb upstream 5.0kb upstream 9521 true scaffold_4: 18470871-18480391 Setaria italica
Seita.4G148400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 18475392-18480391 Setaria italica
Seita.4G148400 5.0kb downstream 5.0kb downstream 9521 true scaffold_4: 18465871-18475391 Setaria italica
Seita.4G148400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 18465871-18470870 Setaria italica
Seita.4G148400 10.0kb upstream 10.0kb upstream 14521 true scaffold_4: 18470871-18485391 Setaria italica
Seita.4G148400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 18475392-18485391 Setaria italica
Seita.4G148400 10.0kb downstream 10.0kb downstream 14521 true scaffold_4: 18460871-18475391 Setaria italica
Seita.4G148400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 18460871-18470870 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026297 5273 Angiosperm View MSA
122179408 5267 Panicoideae View MSA
124570291 5269 Grass View MSA
121343923 5274 Embryophyte View MSA
123425423 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.842       Low
cufflinks 3.516        
cufflinks 7.502        
cufflinks 10.737       High
cufflinks 15.366     High High
cufflinks 2.992        
cufflinks 6.751        
cufflinks 18.394     High High
cufflinks 11.814       High
cufflinks 5.062        
cufflinks 2.09       Low
cufflinks 2.94        
cufflinks 4.236        
cufflinks 9.522        
cufflinks 3.079        
cufflinks 3.953        
cufflinks 4.172        
cufflinks 0.972       Low
cufflinks 10.134        
cufflinks 4.14        

0 Strain