Gene : Seita.4G149300 S. italica v2.2
Defline:  (1 of 1) PF06792 - Uncharacterised protein family (UPF0261) (UPF0261) Genomic Order:  1493
Name:  ? Seita.4G149300 Secondary Identifier:  ? PAC:32707512
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G149300 0.5kb upstream 0.5kb upstream 5544 true scaffold_4: 19159619-19165162 Setaria italica
Seita.4G149300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 19159619-19160118 Setaria italica
Seita.4G149300 0.5kb downstream 0.5kb downstream 5544 true scaffold_4: 19160119-19165662 Setaria italica
Seita.4G149300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 19165163-19165662 Setaria italica
Seita.4G149300 1.0kb upstream 1.0kb upstream 6044 true scaffold_4: 19159119-19165162 Setaria italica
Seita.4G149300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 19159119-19160118 Setaria italica
Seita.4G149300 1.0kb downstream 1.0kb downstream 6044 true scaffold_4: 19160119-19166162 Setaria italica
Seita.4G149300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 19165163-19166162 Setaria italica
Seita.4G149300 2.0kb upstream 2.0kb upstream 7044 true scaffold_4: 19158119-19165162 Setaria italica
Seita.4G149300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 19158119-19160118 Setaria italica
Seita.4G149300 2.0kb downstream 2.0kb downstream 7044 true scaffold_4: 19160119-19167162 Setaria italica
Seita.4G149300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 19165163-19167162 Setaria italica
Seita.4G149300 5.0kb upstream 5.0kb upstream 10044 true scaffold_4: 19155119-19165162 Setaria italica
Seita.4G149300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 19155119-19160118 Setaria italica
Seita.4G149300 5.0kb downstream 5.0kb downstream 10044 true scaffold_4: 19160119-19170162 Setaria italica
Seita.4G149300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 19165163-19170162 Setaria italica
Seita.4G149300 10.0kb upstream 10.0kb upstream 15044 true scaffold_4: 19150119-19165162 Setaria italica
Seita.4G149300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 19150119-19160118 Setaria italica
Seita.4G149300 10.0kb downstream 10.0kb downstream 15044 true scaffold_4: 19160119-19175162 Setaria italica
Seita.4G149300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 19165163-19175162 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182704 5267 Panicoideae View MSA
124573664 5269 Grass View MSA
122044377 5273 Angiosperm View MSA
121345616 5274 Embryophyte View MSA
123380245 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.103        
cufflinks 4.394        
cufflinks 4.194        
cufflinks 3.441        
cufflinks 2.94       Low
cufflinks 3.948        
cufflinks 3.384        
cufflinks 3.14        
cufflinks 3.331        
cufflinks 2.814       Low
cufflinks 6.847       High
cufflinks 7.562       High
cufflinks 10.786       High
cufflinks 3.258        
cufflinks 6.454        
cufflinks 3.115        
cufflinks 6.076        
cufflinks 4.56        
cufflinks 3.553        
cufflinks 6.579       High

0 Strain