Gene : Seita.4G178900 S. italica v2.2
Genomic Order:  1789 Name:  ? Seita.4G178900
Secondary Identifier:  ? PAC:32707174
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G178900 0.5kb upstream 0.5kb upstream 1732 true scaffold_4: 28859220-28860951 Setaria italica
Seita.4G178900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 28860452-28860951 Setaria italica
Seita.4G178900 0.5kb downstream 0.5kb downstream 1732 true scaffold_4: 28858720-28860451 Setaria italica
Seita.4G178900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 28858720-28859219 Setaria italica
Seita.4G178900 1.0kb upstream 1.0kb upstream 2232 true scaffold_4: 28859220-28861451 Setaria italica
Seita.4G178900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 28860452-28861451 Setaria italica
Seita.4G178900 1.0kb downstream 1.0kb downstream 2232 true scaffold_4: 28858220-28860451 Setaria italica
Seita.4G178900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 28858220-28859219 Setaria italica
Seita.4G178900 2.0kb upstream 2.0kb upstream 3232 true scaffold_4: 28859220-28862451 Setaria italica
Seita.4G178900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 28860452-28862451 Setaria italica
Seita.4G178900 2.0kb downstream 2.0kb downstream 3232 true scaffold_4: 28857220-28860451 Setaria italica
Seita.4G178900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 28857220-28859219 Setaria italica
Seita.4G178900 5.0kb upstream 5.0kb upstream 6232 true scaffold_4: 28859220-28865451 Setaria italica
Seita.4G178900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 28860452-28865451 Setaria italica
Seita.4G178900 5.0kb downstream 5.0kb downstream 6232 true scaffold_4: 28854220-28860451 Setaria italica
Seita.4G178900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 28854220-28859219 Setaria italica
Seita.4G178900 10.0kb upstream 10.0kb upstream 11232 true scaffold_4: 28859220-28870451 Setaria italica
Seita.4G178900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 28860452-28870451 Setaria italica
Seita.4G178900 10.0kb downstream 10.0kb downstream 11232 true scaffold_4: 28849220-28860451 Setaria italica
Seita.4G178900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 28849220-28859219 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191163 5267 Panicoideae View MSA
124572059 5269 Grass View MSA
122049141 5273 Angiosperm View MSA
121350568 5274 Embryophyte View MSA
123381799 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.022        
cufflinks 0.272       Low
cufflinks 4.874        
cufflinks 7.146        
cufflinks 7.792        
cufflinks 0.203       Low
cufflinks 12.82       High
cufflinks 2.877        
cufflinks 5.488        
cufflinks 6.131        
cufflinks 4.273        
cufflinks 1.776        
cufflinks 5.221        
cufflinks 3.2        
cufflinks 3.396        
cufflinks 5.399        
cufflinks 2.04        
cufflinks 1.744        
cufflinks 5.098        
cufflinks 2.89        

0 Strain