Gene : Seita.4G180400 S. italica v2.2
Defline:  (1 of 1) PTHR23041:SF65 - E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG Genomic Order:  1804
Name:  ? Seita.4G180400 Secondary Identifier:  ? PAC:32709323
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G180400 0.5kb upstream 0.5kb upstream 5867 true scaffold_4: 29178623-29184489 Setaria italica
Seita.4G180400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 29178623-29179122 Setaria italica
Seita.4G180400 0.5kb downstream 0.5kb downstream 5867 true scaffold_4: 29179123-29184989 Setaria italica
Seita.4G180400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 29184490-29184989 Setaria italica
Seita.4G180400 1.0kb upstream 1.0kb upstream 6367 true scaffold_4: 29178123-29184489 Setaria italica
Seita.4G180400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 29178123-29179122 Setaria italica
Seita.4G180400 1.0kb downstream 1.0kb downstream 6367 true scaffold_4: 29179123-29185489 Setaria italica
Seita.4G180400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 29184490-29185489 Setaria italica
Seita.4G180400 2.0kb upstream 2.0kb upstream 7367 true scaffold_4: 29177123-29184489 Setaria italica
Seita.4G180400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 29177123-29179122 Setaria italica
Seita.4G180400 2.0kb downstream 2.0kb downstream 7367 true scaffold_4: 29179123-29186489 Setaria italica
Seita.4G180400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 29184490-29186489 Setaria italica
Seita.4G180400 5.0kb upstream 5.0kb upstream 10367 true scaffold_4: 29174123-29184489 Setaria italica
Seita.4G180400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 29174123-29179122 Setaria italica
Seita.4G180400 5.0kb downstream 5.0kb downstream 10367 true scaffold_4: 29179123-29189489 Setaria italica
Seita.4G180400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 29184490-29189489 Setaria italica
Seita.4G180400 10.0kb upstream 10.0kb upstream 15367 true scaffold_4: 29169123-29184489 Setaria italica
Seita.4G180400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 29169123-29179122 Setaria italica
Seita.4G180400 10.0kb downstream 10.0kb downstream 15367 true scaffold_4: 29179123-29194489 Setaria italica
Seita.4G180400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 29184490-29194489 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179606 5267 Panicoideae View MSA
124579363 5269 Grass View MSA
122042121 5273 Angiosperm View MSA
121345385 5274 Embryophyte View MSA
123428682 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.64        
cufflinks 0.433        
cufflinks 0.298       Low
cufflinks 0.266       Low
cufflinks 0.289       Low
cufflinks 0.465        
cufflinks 0.634        
cufflinks 0.655        
cufflinks 0.491        
cufflinks 0.502        
cufflinks 0.612        
cufflinks 0.731        
cufflinks 0.509        
cufflinks 0.595        
cufflinks 0.5        
cufflinks 0.815       High
cufflinks 0.552        
cufflinks 1.137       High
cufflinks 0.562        
cufflinks 0.562        

0 Strain