Gene : Seita.4G184000 S. italica v2.2
Defline:  (1 of 1) PTHR10682:SF22 - NUCLEAR POLY(A) POLYMERASE Genomic Order:  1840
Name:  ? Seita.4G184000 Secondary Identifier:  ? PAC:32706510
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G184000 0.5kb upstream 0.5kb upstream 6977 true scaffold_4: 29874218-29881194 Setaria italica
Seita.4G184000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 29880695-29881194 Setaria italica
Seita.4G184000 0.5kb downstream 0.5kb downstream 6977 true scaffold_4: 29873718-29880694 Setaria italica
Seita.4G184000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 29873718-29874217 Setaria italica
Seita.4G184000 1.0kb upstream 1.0kb upstream 7477 true scaffold_4: 29874218-29881694 Setaria italica
Seita.4G184000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 29880695-29881694 Setaria italica
Seita.4G184000 1.0kb downstream 1.0kb downstream 7477 true scaffold_4: 29873218-29880694 Setaria italica
Seita.4G184000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 29873218-29874217 Setaria italica
Seita.4G184000 2.0kb upstream 2.0kb upstream 8477 true scaffold_4: 29874218-29882694 Setaria italica
Seita.4G184000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 29880695-29882694 Setaria italica
Seita.4G184000 2.0kb downstream 2.0kb downstream 8477 true scaffold_4: 29872218-29880694 Setaria italica
Seita.4G184000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 29872218-29874217 Setaria italica
Seita.4G184000 5.0kb upstream 5.0kb upstream 11477 true scaffold_4: 29874218-29885694 Setaria italica
Seita.4G184000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 29880695-29885694 Setaria italica
Seita.4G184000 5.0kb downstream 5.0kb downstream 11477 true scaffold_4: 29869218-29880694 Setaria italica
Seita.4G184000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 29869218-29874217 Setaria italica
Seita.4G184000 10.0kb upstream 10.0kb upstream 16477 true scaffold_4: 29874218-29890694 Setaria italica
Seita.4G184000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 29880695-29890694 Setaria italica
Seita.4G184000 10.0kb downstream 10.0kb downstream 16477 true scaffold_4: 29864218-29880694 Setaria italica
Seita.4G184000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 29864218-29874217 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178537 5267 Panicoideae View MSA
124575316 5269 Grass View MSA
122045017 5273 Angiosperm View MSA
123429108 5275 Viridiplantae View MSA
121348362 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.863     High  
cufflinks 22.453     High  
cufflinks 32.341     High High
cufflinks 27.206     High High
cufflinks 25.057     High  
cufflinks 23.972     High  
cufflinks 16.356     High  
cufflinks 23.062     High  
cufflinks 17.406     High  
cufflinks 13.337       Low
cufflinks 21.004     High  
cufflinks 14.729     High Low
cufflinks 15.056     High Low
cufflinks 26.32     High High
cufflinks 16.488     High  
cufflinks 23.977     High  
cufflinks 14.89     High Low
cufflinks 26.925     High High
cufflinks 14.812     High Low
cufflinks 14.083       Low

0 Strain