Gene : Seita.4G117000 S. italica v2.2
Defline:  (1 of 1) PTHR11654:SF178 - PROTEIN NRT1/ PTR FAMILY 3.1 Genomic Order:  1170
Name:  ? Seita.4G117000 Secondary Identifier:  ? PAC:32706476
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G117000 0.5kb upstream 0.5kb upstream 4352 true scaffold_4: 11587251-11591602 Setaria italica
Seita.4G117000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 11587251-11587750 Setaria italica
Seita.4G117000 0.5kb downstream 0.5kb downstream 4352 true scaffold_4: 11587751-11592102 Setaria italica
Seita.4G117000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 11591603-11592102 Setaria italica
Seita.4G117000 1.0kb upstream 1.0kb upstream 4852 true scaffold_4: 11586751-11591602 Setaria italica
Seita.4G117000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 11586751-11587750 Setaria italica
Seita.4G117000 1.0kb downstream 1.0kb downstream 4852 true scaffold_4: 11587751-11592602 Setaria italica
Seita.4G117000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 11591603-11592602 Setaria italica
Seita.4G117000 2.0kb upstream 2.0kb upstream 5852 true scaffold_4: 11585751-11591602 Setaria italica
Seita.4G117000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 11585751-11587750 Setaria italica
Seita.4G117000 2.0kb downstream 2.0kb downstream 5852 true scaffold_4: 11587751-11593602 Setaria italica
Seita.4G117000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 11591603-11593602 Setaria italica
Seita.4G117000 5.0kb upstream 5.0kb upstream 8852 true scaffold_4: 11582751-11591602 Setaria italica
Seita.4G117000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 11582751-11587750 Setaria italica
Seita.4G117000 5.0kb downstream 5.0kb downstream 8852 true scaffold_4: 11587751-11596602 Setaria italica
Seita.4G117000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 11591603-11596602 Setaria italica
Seita.4G117000 10.0kb upstream 10.0kb upstream 13852 true scaffold_4: 11577751-11591602 Setaria italica
Seita.4G117000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 11577751-11587750 Setaria italica
Seita.4G117000 10.0kb downstream 10.0kb downstream 13852 true scaffold_4: 11587751-11601602 Setaria italica
Seita.4G117000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 11591603-11601602 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188888 5267 Panicoideae View MSA
124584242 5269 Grass View MSA
122044547 5273 Angiosperm View MSA
121351267 5274 Embryophyte View MSA
123382085 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.809       High
cufflinks 2.279        
cufflinks 0.098        
cufflinks 0.079     Low  
cufflinks 0.251        
cufflinks 3.159       High
cufflinks 0.85        
cufflinks 1.172        
cufflinks 0.702        
cufflinks 3.6       High
cufflinks 2.564       High
cufflinks 0.004     Low Low
cufflinks 1.367        
cufflinks 0.498        
cufflinks 0.043     Low Low
cufflinks 0.491        
cufflinks 0.039     Low Low
cufflinks 0.55        
cufflinks 0.331        
cufflinks 0.053     Low Low

0 Strain