Gene : Seita.4G126200 S. italica v2.2
Defline:  (1 of 1) PTHR12663:SF0 - PDS5 Genomic Order:  1262
Name:  ? Seita.4G126200 Secondary Identifier:  ? PAC:32708820
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G126200 0.5kb upstream 0.5kb upstream 16125 true scaffold_4: 13039553-13055677 Setaria italica
Seita.4G126200 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13055178-13055677 Setaria italica
Seita.4G126200 0.5kb downstream 0.5kb downstream 16125 true scaffold_4: 13039053-13055177 Setaria italica
Seita.4G126200 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13039053-13039552 Setaria italica
Seita.4G126200 1.0kb upstream 1.0kb upstream 16625 true scaffold_4: 13039553-13056177 Setaria italica
Seita.4G126200 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13055178-13056177 Setaria italica
Seita.4G126200 1.0kb downstream 1.0kb downstream 16625 true scaffold_4: 13038553-13055177 Setaria italica
Seita.4G126200 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13038553-13039552 Setaria italica
Seita.4G126200 2.0kb upstream 2.0kb upstream 17625 true scaffold_4: 13039553-13057177 Setaria italica
Seita.4G126200 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13055178-13057177 Setaria italica
Seita.4G126200 2.0kb downstream 2.0kb downstream 17625 true scaffold_4: 13037553-13055177 Setaria italica
Seita.4G126200 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13037553-13039552 Setaria italica
Seita.4G126200 5.0kb upstream 5.0kb upstream 20625 true scaffold_4: 13039553-13060177 Setaria italica
Seita.4G126200 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13055178-13060177 Setaria italica
Seita.4G126200 5.0kb downstream 5.0kb downstream 20625 true scaffold_4: 13034553-13055177 Setaria italica
Seita.4G126200 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13034553-13039552 Setaria italica
Seita.4G126200 10.0kb upstream 10.0kb upstream 25625 true scaffold_4: 13039553-13065177 Setaria italica
Seita.4G126200 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13055178-13065177 Setaria italica
Seita.4G126200 10.0kb downstream 10.0kb downstream 25625 true scaffold_4: 13029553-13055177 Setaria italica
Seita.4G126200 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13029553-13039552 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182314 5267 Panicoideae View MSA
124577653 5269 Grass View MSA
122045093 5273 Angiosperm View MSA
121348998 5274 Embryophyte View MSA
123426721 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.108     High  
cufflinks 22.495     High High
cufflinks 17.526     High  
cufflinks 12.494     High  
cufflinks 10.297        
cufflinks 21.485     High  
cufflinks 19.799     High  
cufflinks 14.075     High  
cufflinks 14.443     High  
cufflinks 4.667       Low
cufflinks 14.555     High  
cufflinks 14.252     High  
cufflinks 10.809        
cufflinks 16.999     High  
cufflinks 17.426     High  
cufflinks 23.273     High High
cufflinks 12.11        
cufflinks 26.56     High High
cufflinks 9.759       Low
cufflinks 13.077        

0 Strain