Gene : Seita.4G131200 S. italica v2.2
Defline:  (1 of 1) PTHR31133:SF2 - EXPRESSED PROTEIN Genomic Order:  1312
Name:  ? Seita.4G131200 Secondary Identifier:  ? PAC:32708177
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G131200 0.5kb upstream 0.5kb upstream 3694 true scaffold_4: 13988032-13991725 Setaria italica
Seita.4G131200 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 13991226-13991725 Setaria italica
Seita.4G131200 0.5kb downstream 0.5kb downstream 3694 true scaffold_4: 13987532-13991225 Setaria italica
Seita.4G131200 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 13987532-13988031 Setaria italica
Seita.4G131200 1.0kb upstream 1.0kb upstream 4194 true scaffold_4: 13988032-13992225 Setaria italica
Seita.4G131200 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 13991226-13992225 Setaria italica
Seita.4G131200 1.0kb downstream 1.0kb downstream 4194 true scaffold_4: 13987032-13991225 Setaria italica
Seita.4G131200 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 13987032-13988031 Setaria italica
Seita.4G131200 2.0kb upstream 2.0kb upstream 5194 true scaffold_4: 13988032-13993225 Setaria italica
Seita.4G131200 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 13991226-13993225 Setaria italica
Seita.4G131200 2.0kb downstream 2.0kb downstream 5194 true scaffold_4: 13986032-13991225 Setaria italica
Seita.4G131200 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 13986032-13988031 Setaria italica
Seita.4G131200 5.0kb upstream 5.0kb upstream 8194 true scaffold_4: 13988032-13996225 Setaria italica
Seita.4G131200 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 13991226-13996225 Setaria italica
Seita.4G131200 5.0kb downstream 5.0kb downstream 8194 true scaffold_4: 13983032-13991225 Setaria italica
Seita.4G131200 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 13983032-13988031 Setaria italica
Seita.4G131200 10.0kb upstream 10.0kb upstream 13194 true scaffold_4: 13988032-14001225 Setaria italica
Seita.4G131200 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 13991226-14001225 Setaria italica
Seita.4G131200 10.0kb downstream 10.0kb downstream 13194 true scaffold_4: 13978032-13991225 Setaria italica
Seita.4G131200 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 13978032-13988031 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189115 5267 Panicoideae View MSA
124569110 5269 Grass View MSA
122043986 5273 Angiosperm View MSA
121350434 5274 Embryophyte View MSA
123381729 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.014     Low Low
cufflinks 0.08     Low  
cufflinks 0.099        
cufflinks 0.025     Low Low
cufflinks 0.087        
cufflinks 0.052     Low  
cufflinks 0.067     Low  
cufflinks 0.031     Low  
cufflinks 0.023     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low Low
cufflinks 0.073     Low  
cufflinks 0.491       High
cufflinks 0.183       High
cufflinks 0.231       High
cufflinks 0.087     Low  
cufflinks 0.114     Low  
cufflinks 0.031     Low  
cufflinks 0.113        
cufflinks 0.171        

0 Strain