Gene : Seita.4G138300 S. italica v2.2
Defline:  (1 of 1) KOG0511 - Ankyrin repeat protein Genomic Order:  1383
Name:  ? Seita.4G138300 Secondary Identifier:  ? PAC:32707454
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G138300 0.5kb upstream 0.5kb upstream 3627 true scaffold_4: 15503520-15507146 Setaria italica
Seita.4G138300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 15503520-15504019 Setaria italica
Seita.4G138300 0.5kb downstream 0.5kb downstream 3627 true scaffold_4: 15504020-15507646 Setaria italica
Seita.4G138300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 15507147-15507646 Setaria italica
Seita.4G138300 1.0kb upstream 1.0kb upstream 4127 true scaffold_4: 15503020-15507146 Setaria italica
Seita.4G138300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 15503020-15504019 Setaria italica
Seita.4G138300 1.0kb downstream 1.0kb downstream 4127 true scaffold_4: 15504020-15508146 Setaria italica
Seita.4G138300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 15507147-15508146 Setaria italica
Seita.4G138300 2.0kb upstream 2.0kb upstream 5127 true scaffold_4: 15502020-15507146 Setaria italica
Seita.4G138300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 15502020-15504019 Setaria italica
Seita.4G138300 2.0kb downstream 2.0kb downstream 5127 true scaffold_4: 15504020-15509146 Setaria italica
Seita.4G138300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 15507147-15509146 Setaria italica
Seita.4G138300 5.0kb upstream 5.0kb upstream 8127 true scaffold_4: 15499020-15507146 Setaria italica
Seita.4G138300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 15499020-15504019 Setaria italica
Seita.4G138300 5.0kb downstream 5.0kb downstream 8127 true scaffold_4: 15504020-15512146 Setaria italica
Seita.4G138300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 15507147-15512146 Setaria italica
Seita.4G138300 10.0kb upstream 10.0kb upstream 13127 true scaffold_4: 15494020-15507146 Setaria italica
Seita.4G138300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 15494020-15504019 Setaria italica
Seita.4G138300 10.0kb downstream 10.0kb downstream 13127 true scaffold_4: 15504020-15517146 Setaria italica
Seita.4G138300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 15507147-15517146 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198099 5267 Panicoideae View MSA
124575892 5269 Grass View MSA
122051228 5273 Angiosperm View MSA
123429159 5275 Viridiplantae View MSA
121345806 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.248       Low
cufflinks 17.518     High High
cufflinks 16.324     High  
cufflinks 12.103     High  
cufflinks 12.56     High  
cufflinks 17.231     High High
cufflinks 9.997        
cufflinks 18.932     High High
cufflinks 12.259        
cufflinks 7.822       Low
cufflinks 11.503        
cufflinks 9.32        
cufflinks 9.16        
cufflinks 22.428     High High
cufflinks 9.667        
cufflinks 11.06        
cufflinks 10.507        
cufflinks 13.369     High  
cufflinks 4.946       Low
cufflinks 10.188        

0 Strain