Gene : Seita.4G139300 S. italica v2.2
Defline:  (1 of 3) PTHR10956 - 60S RIBOSOMAL PROTEIN L31 Genomic Order:  1393
Name:  ? Seita.4G139300 Secondary Identifier:  ? PAC:32706877
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G139300 0.5kb upstream 0.5kb upstream 2843 true scaffold_4: 15834707-15837549 Setaria italica
Seita.4G139300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 15834707-15835206 Setaria italica
Seita.4G139300 0.5kb downstream 0.5kb downstream 2843 true scaffold_4: 15835207-15838049 Setaria italica
Seita.4G139300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 15837550-15838049 Setaria italica
Seita.4G139300 1.0kb upstream 1.0kb upstream 3343 true scaffold_4: 15834207-15837549 Setaria italica
Seita.4G139300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 15834207-15835206 Setaria italica
Seita.4G139300 1.0kb downstream 1.0kb downstream 3343 true scaffold_4: 15835207-15838549 Setaria italica
Seita.4G139300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 15837550-15838549 Setaria italica
Seita.4G139300 2.0kb upstream 2.0kb upstream 4343 true scaffold_4: 15833207-15837549 Setaria italica
Seita.4G139300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 15833207-15835206 Setaria italica
Seita.4G139300 2.0kb downstream 2.0kb downstream 4343 true scaffold_4: 15835207-15839549 Setaria italica
Seita.4G139300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 15837550-15839549 Setaria italica
Seita.4G139300 5.0kb upstream 5.0kb upstream 7343 true scaffold_4: 15830207-15837549 Setaria italica
Seita.4G139300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 15830207-15835206 Setaria italica
Seita.4G139300 5.0kb downstream 5.0kb downstream 7343 true scaffold_4: 15835207-15842549 Setaria italica
Seita.4G139300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 15837550-15842549 Setaria italica
Seita.4G139300 10.0kb upstream 10.0kb upstream 12343 true scaffold_4: 15825207-15837549 Setaria italica
Seita.4G139300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 15825207-15835206 Setaria italica
Seita.4G139300 10.0kb downstream 10.0kb downstream 12343 true scaffold_4: 15835207-15847549 Setaria italica
Seita.4G139300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 15837550-15847549 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175752 5267 Panicoideae View MSA
124572680 5269 Grass View MSA
122042669 5273 Angiosperm View MSA
121350907 5274 Embryophyte View MSA
123424702 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.223     High  
cufflinks 32.153     High  
cufflinks 4.505       Low
cufflinks 3.49       Low
cufflinks 6.092       Low
cufflinks 29.319     High  
cufflinks 19.904     High  
cufflinks 44.212     High  
cufflinks 45.777     High High
cufflinks 54.332     High High
cufflinks 30.96     High  
cufflinks 25.909     High  
cufflinks 23.974     High  
cufflinks 10.081        
cufflinks 33.238     High  
cufflinks 6.313       Low
cufflinks 45.369     High High
cufflinks 3.464       Low
cufflinks 7.637        
cufflinks 47.944     High High

0 Strain