Gene : Seita.4G239100 S. italica v2.2
Defline:  (1 of 29) PTHR11353 - CHAPERONIN Genomic Order:  2391
Name:  ? Seita.4G239100 Secondary Identifier:  ? PAC:32708708
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G239100 0.5kb upstream 0.5kb upstream 5495 true scaffold_4: 36307062-36312556 Setaria italica
Seita.4G239100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 36312057-36312556 Setaria italica
Seita.4G239100 0.5kb downstream 0.5kb downstream 5495 true scaffold_4: 36306562-36312056 Setaria italica
Seita.4G239100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 36306562-36307061 Setaria italica
Seita.4G239100 1.0kb upstream 1.0kb upstream 5995 true scaffold_4: 36307062-36313056 Setaria italica
Seita.4G239100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 36312057-36313056 Setaria italica
Seita.4G239100 1.0kb downstream 1.0kb downstream 5995 true scaffold_4: 36306062-36312056 Setaria italica
Seita.4G239100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 36306062-36307061 Setaria italica
Seita.4G239100 2.0kb upstream 2.0kb upstream 6995 true scaffold_4: 36307062-36314056 Setaria italica
Seita.4G239100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 36312057-36314056 Setaria italica
Seita.4G239100 2.0kb downstream 2.0kb downstream 6995 true scaffold_4: 36305062-36312056 Setaria italica
Seita.4G239100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 36305062-36307061 Setaria italica
Seita.4G239100 5.0kb upstream 5.0kb upstream 9995 true scaffold_4: 36307062-36317056 Setaria italica
Seita.4G239100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 36312057-36317056 Setaria italica
Seita.4G239100 5.0kb downstream 5.0kb downstream 9995 true scaffold_4: 36302062-36312056 Setaria italica
Seita.4G239100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 36302062-36307061 Setaria italica
Seita.4G239100 10.0kb upstream 10.0kb upstream 14995 true scaffold_4: 36307062-36322056 Setaria italica
Seita.4G239100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 36312057-36322056 Setaria italica
Seita.4G239100 10.0kb downstream 10.0kb downstream 14995 true scaffold_4: 36297062-36312056 Setaria italica
Seita.4G239100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 36297062-36307061 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197866 5267 Panicoideae View MSA
124582588 5269 Grass View MSA
122043511 5273 Angiosperm View MSA
121350582 5274 Embryophyte View MSA
123425092 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.269     High  
cufflinks 23.573     High  
cufflinks 6.119        
cufflinks 3.146       Low
cufflinks 4.334       Low
cufflinks 25.563     High High
cufflinks 11.743        
cufflinks 20.066     High  
cufflinks 15.914     High  
cufflinks 12.064        
cufflinks 20.012     High  
cufflinks 17.665     High  
cufflinks 11.003        
cufflinks 8.836        
cufflinks 22.38     High  
cufflinks 4.93       Low
cufflinks 25.198     High High
cufflinks 4.613       Low
cufflinks 5.014       Low
cufflinks 27.937     High High

0 Strain