Gene : Seita.4G241800 S. italica v2.2
Defline:  (1 of 11) PTHR21141 - 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER Genomic Order:  2418
Name:  ? Seita.4G241800 Secondary Identifier:  ? PAC:32706725
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G241800 0.5kb upstream 0.5kb upstream 1841 true scaffold_4: 36596282-36598122 Setaria italica
Seita.4G241800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 36596282-36596781 Setaria italica
Seita.4G241800 0.5kb downstream 0.5kb downstream 1841 true scaffold_4: 36596782-36598622 Setaria italica
Seita.4G241800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 36598123-36598622 Setaria italica
Seita.4G241800 1.0kb upstream 1.0kb upstream 2341 true scaffold_4: 36595782-36598122 Setaria italica
Seita.4G241800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 36595782-36596781 Setaria italica
Seita.4G241800 1.0kb downstream 1.0kb downstream 2341 true scaffold_4: 36596782-36599122 Setaria italica
Seita.4G241800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 36598123-36599122 Setaria italica
Seita.4G241800 2.0kb upstream 2.0kb upstream 3341 true scaffold_4: 36594782-36598122 Setaria italica
Seita.4G241800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 36594782-36596781 Setaria italica
Seita.4G241800 2.0kb downstream 2.0kb downstream 3341 true scaffold_4: 36596782-36600122 Setaria italica
Seita.4G241800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 36598123-36600122 Setaria italica
Seita.4G241800 5.0kb upstream 5.0kb upstream 6341 true scaffold_4: 36591782-36598122 Setaria italica
Seita.4G241800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 36591782-36596781 Setaria italica
Seita.4G241800 5.0kb downstream 5.0kb downstream 6341 true scaffold_4: 36596782-36603122 Setaria italica
Seita.4G241800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 36598123-36603122 Setaria italica
Seita.4G241800 10.0kb upstream 10.0kb upstream 11341 true scaffold_4: 36586782-36598122 Setaria italica
Seita.4G241800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 36586782-36596781 Setaria italica
Seita.4G241800 10.0kb downstream 10.0kb downstream 11341 true scaffold_4: 36596782-36608122 Setaria italica
Seita.4G241800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 36598123-36608122 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184003 5267 Panicoideae View MSA
124577323 5269 Grass View MSA
122041994 5273 Angiosperm View MSA
121347271 5274 Embryophyte View MSA
123424793 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 50.228     High  
cufflinks 83.462     High  
cufflinks 26.922     High Low
cufflinks 16.895     High Low
cufflinks 27.091     High Low
cufflinks 96.67     High  
cufflinks 57.943     High  
cufflinks 149.524     High High
cufflinks 100.57     High  
cufflinks 211.697     High High
cufflinks 64.213     High  
cufflinks 55.961     High  
cufflinks 35.071     High  
cufflinks 77.712     High  
cufflinks 65.664     High  
cufflinks 25.158     High Low
cufflinks 86.932     High  
cufflinks 22.702     High Low
cufflinks 32.833     High  
cufflinks 86.329     High  

0 Strain