Gene : Seita.4G252000 S. italica v2.2
Defline:  (1 of 1) PTHR11014:SF62 - IAA-AMINO ACID HYDROLASE ILR1-LIKE 6 Genomic Order:  2520
Name:  ? Seita.4G252000 Secondary Identifier:  ? PAC:32707908
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G252000 0.5kb upstream 0.5kb upstream 5066 true scaffold_4: 37277577-37282642 Setaria italica
Seita.4G252000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 37277577-37278076 Setaria italica
Seita.4G252000 0.5kb downstream 0.5kb downstream 5066 true scaffold_4: 37278077-37283142 Setaria italica
Seita.4G252000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 37282643-37283142 Setaria italica
Seita.4G252000 1.0kb upstream 1.0kb upstream 5566 true scaffold_4: 37277077-37282642 Setaria italica
Seita.4G252000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 37277077-37278076 Setaria italica
Seita.4G252000 1.0kb downstream 1.0kb downstream 5566 true scaffold_4: 37278077-37283642 Setaria italica
Seita.4G252000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 37282643-37283642 Setaria italica
Seita.4G252000 2.0kb upstream 2.0kb upstream 6566 true scaffold_4: 37276077-37282642 Setaria italica
Seita.4G252000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 37276077-37278076 Setaria italica
Seita.4G252000 2.0kb downstream 2.0kb downstream 6566 true scaffold_4: 37278077-37284642 Setaria italica
Seita.4G252000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 37282643-37284642 Setaria italica
Seita.4G252000 5.0kb upstream 5.0kb upstream 9566 true scaffold_4: 37273077-37282642 Setaria italica
Seita.4G252000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 37273077-37278076 Setaria italica
Seita.4G252000 5.0kb downstream 5.0kb downstream 9566 true scaffold_4: 37278077-37287642 Setaria italica
Seita.4G252000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 37282643-37287642 Setaria italica
Seita.4G252000 10.0kb upstream 10.0kb upstream 14566 true scaffold_4: 37268077-37282642 Setaria italica
Seita.4G252000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 37268077-37278076 Setaria italica
Seita.4G252000 10.0kb downstream 10.0kb downstream 14566 true scaffold_4: 37278077-37292642 Setaria italica
Seita.4G252000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 37282643-37292642 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176720 5267 Panicoideae View MSA
124580515 5269 Grass View MSA
122047186 5273 Angiosperm View MSA
121350602 5274 Embryophyte View MSA
123427442 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.725        
cufflinks 3.051       High
cufflinks 0.335       Low
cufflinks 0.422       Low
cufflinks 0.706        
cufflinks 4.081       High
cufflinks 1.764        
cufflinks 3.085       High
cufflinks 3.415       High
cufflinks 1.337        
cufflinks 0.542       Low
cufflinks 0.954        
cufflinks 1.137        
cufflinks 2.074        
cufflinks 0.582       Low
cufflinks 1.3        
cufflinks 1.163        
cufflinks 1.217        
cufflinks 2.039        
cufflinks 0.775        

0 Strain