Gene : Seita.4G259000 S. italica v2.2
Defline:  (1 of 1) PTHR11618:SF4 - TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT Genomic Order:  2590
Name:  ? Seita.4G259000 Secondary Identifier:  ? PAC:32706597
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G259000 0.5kb upstream 0.5kb upstream 12431 true scaffold_4: 37777755-37790185 Setaria italica
Seita.4G259000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 37789686-37790185 Setaria italica
Seita.4G259000 0.5kb downstream 0.5kb downstream 12431 true scaffold_4: 37777255-37789685 Setaria italica
Seita.4G259000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 37777255-37777754 Setaria italica
Seita.4G259000 1.0kb upstream 1.0kb upstream 12931 true scaffold_4: 37777755-37790685 Setaria italica
Seita.4G259000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 37789686-37790685 Setaria italica
Seita.4G259000 1.0kb downstream 1.0kb downstream 12931 true scaffold_4: 37776755-37789685 Setaria italica
Seita.4G259000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 37776755-37777754 Setaria italica
Seita.4G259000 2.0kb upstream 2.0kb upstream 13931 true scaffold_4: 37777755-37791685 Setaria italica
Seita.4G259000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 37789686-37791685 Setaria italica
Seita.4G259000 2.0kb downstream 2.0kb downstream 13931 true scaffold_4: 37775755-37789685 Setaria italica
Seita.4G259000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 37775755-37777754 Setaria italica
Seita.4G259000 5.0kb upstream 5.0kb upstream 16931 true scaffold_4: 37777755-37794685 Setaria italica
Seita.4G259000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 37789686-37794685 Setaria italica
Seita.4G259000 5.0kb downstream 5.0kb downstream 16931 true scaffold_4: 37772755-37789685 Setaria italica
Seita.4G259000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 37772755-37777754 Setaria italica
Seita.4G259000 10.0kb upstream 10.0kb upstream 21931 true scaffold_4: 37777755-37799685 Setaria italica
Seita.4G259000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 37789686-37799685 Setaria italica
Seita.4G259000 10.0kb downstream 10.0kb downstream 21931 true scaffold_4: 37767755-37789685 Setaria italica
Seita.4G259000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 37767755-37777754 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181785 5267 Panicoideae View MSA
124573178 5269 Grass View MSA
122049145 5273 Angiosperm View MSA
121351360 5274 Embryophyte View MSA
123427604 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.837       High
cufflinks 4.004        
cufflinks 3.978        
cufflinks 3.778        
cufflinks 3.149        
cufflinks 4.327        
cufflinks 3.274        
cufflinks 4.176        
cufflinks 2.802       Low
cufflinks 2.352       Low
cufflinks 3.556        
cufflinks 5.57       High
cufflinks 2.936       Low
cufflinks 3.997        
cufflinks 4.004        
cufflinks 4.054        
cufflinks 4.626        
cufflinks 5.335       High
cufflinks 3.436        
cufflinks 3.739        

0 Strain