Gene : Seita.4G192100 S. italica v2.2
Defline:  (1 of 3) 1.1.1.95 - Phosphoglycerate dehydrogenase / Phosphoglyceric acid dehydrogenase Genomic Order:  1921
Name:  ? Seita.4G192100 Secondary Identifier:  ? PAC:32707406
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica SER-GLYSYN-PWY Setaria italica pathologic  
Sitalica SERSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G192100 0.5kb upstream 0.5kb upstream 4037 true scaffold_4: 31023196-31027232 Setaria italica
Seita.4G192100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 31023196-31023695 Setaria italica
Seita.4G192100 0.5kb downstream 0.5kb downstream 4037 true scaffold_4: 31023696-31027732 Setaria italica
Seita.4G192100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 31027233-31027732 Setaria italica
Seita.4G192100 1.0kb upstream 1.0kb upstream 4537 true scaffold_4: 31022696-31027232 Setaria italica
Seita.4G192100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 31022696-31023695 Setaria italica
Seita.4G192100 1.0kb downstream 1.0kb downstream 4537 true scaffold_4: 31023696-31028232 Setaria italica
Seita.4G192100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 31027233-31028232 Setaria italica
Seita.4G192100 2.0kb upstream 2.0kb upstream 5537 true scaffold_4: 31021696-31027232 Setaria italica
Seita.4G192100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 31021696-31023695 Setaria italica
Seita.4G192100 2.0kb downstream 2.0kb downstream 5537 true scaffold_4: 31023696-31029232 Setaria italica
Seita.4G192100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 31027233-31029232 Setaria italica
Seita.4G192100 5.0kb upstream 5.0kb upstream 8537 true scaffold_4: 31018696-31027232 Setaria italica
Seita.4G192100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 31018696-31023695 Setaria italica
Seita.4G192100 5.0kb downstream 5.0kb downstream 8537 true scaffold_4: 31023696-31032232 Setaria italica
Seita.4G192100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 31027233-31032232 Setaria italica
Seita.4G192100 10.0kb upstream 10.0kb upstream 13537 true scaffold_4: 31013696-31027232 Setaria italica
Seita.4G192100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 31013696-31023695 Setaria italica
Seita.4G192100 10.0kb downstream 10.0kb downstream 13537 true scaffold_4: 31023696-31037232 Setaria italica
Seita.4G192100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 31027233-31037232 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177828 5267 Panicoideae View MSA
124573824 5269 Grass View MSA
122044765 5273 Angiosperm View MSA
121347094 5274 Embryophyte View MSA
123427510 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.48        
cufflinks 5.636        
cufflinks 21.051     High High
cufflinks 16.043     High  
cufflinks 11.736     High  
cufflinks 5.854        
cufflinks 14.993     High  
cufflinks 11.618        
cufflinks 10.488        
cufflinks 2.0        
cufflinks 1.687        
cufflinks 0.257       Low
cufflinks 0.341       Low
cufflinks 17.512     High  
cufflinks 0.199       Low
cufflinks 18.946     High  
cufflinks 0.571       Low
cufflinks 10.248        
cufflinks 14.766     High  
cufflinks 0.149       Low

0 Strain