Gene : Seita.4G195800 S. italica v2.2
Defline:  (1 of 109) PF00226 - DnaJ domain (DnaJ) Genomic Order:  1958
Name:  ? Seita.4G195800 Secondary Identifier:  ? PAC:32708110
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G195800 0.5kb upstream 0.5kb upstream 1704 true scaffold_4: 31377165-31378868 Setaria italica
Seita.4G195800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 31377165-31377664 Setaria italica
Seita.4G195800 0.5kb downstream 0.5kb downstream 1704 true scaffold_4: 31377665-31379368 Setaria italica
Seita.4G195800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 31378869-31379368 Setaria italica
Seita.4G195800 1.0kb upstream 1.0kb upstream 2204 true scaffold_4: 31376665-31378868 Setaria italica
Seita.4G195800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 31376665-31377664 Setaria italica
Seita.4G195800 1.0kb downstream 1.0kb downstream 2204 true scaffold_4: 31377665-31379868 Setaria italica
Seita.4G195800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 31378869-31379868 Setaria italica
Seita.4G195800 2.0kb upstream 2.0kb upstream 3204 true scaffold_4: 31375665-31378868 Setaria italica
Seita.4G195800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 31375665-31377664 Setaria italica
Seita.4G195800 2.0kb downstream 2.0kb downstream 3204 true scaffold_4: 31377665-31380868 Setaria italica
Seita.4G195800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 31378869-31380868 Setaria italica
Seita.4G195800 5.0kb upstream 5.0kb upstream 6204 true scaffold_4: 31372665-31378868 Setaria italica
Seita.4G195800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 31372665-31377664 Setaria italica
Seita.4G195800 5.0kb downstream 5.0kb downstream 6204 true scaffold_4: 31377665-31383868 Setaria italica
Seita.4G195800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 31378869-31383868 Setaria italica
Seita.4G195800 10.0kb upstream 10.0kb upstream 11204 true scaffold_4: 31367665-31378868 Setaria italica
Seita.4G195800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 31367665-31377664 Setaria italica
Seita.4G195800 10.0kb downstream 10.0kb downstream 11204 true scaffold_4: 31377665-31388868 Setaria italica
Seita.4G195800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 31378869-31388868 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190332 5267 Panicoideae View MSA
124568929 5269 Grass View MSA
122046957 5273 Angiosperm View MSA
123429067 5275 Viridiplantae View MSA
121350989 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.861        
cufflinks 3.45       Low
cufflinks 112.442     High  
cufflinks 221.302     High High
cufflinks 109.013     High  
cufflinks 4.268       Low
cufflinks 50.046     High  
cufflinks 45.509     High  
cufflinks 89.194     High  
cufflinks 10.57        
cufflinks 2.9       Low
cufflinks 71.617     High  
cufflinks 24.829     High  
cufflinks 154.639     High High
cufflinks 4.372       Low
cufflinks 47.412     High  
cufflinks 17.142     High  
cufflinks 81.24     High  
cufflinks 98.726     High  
cufflinks 11.684        

0 Strain