Gene : Seita.4G199600 S. italica v2.2
Defline:  (1 of 2) PTHR10617:SF115 - THIAMINE THIAZOLE SYNTHASE Genomic Order:  1996
Name:  ? Seita.4G199600 Secondary Identifier:  ? PAC:32706458
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G199600 0.5kb upstream 0.5kb upstream 2590 true scaffold_4: 31839373-31841962 Setaria italica
Seita.4G199600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 31839373-31839872 Setaria italica
Seita.4G199600 0.5kb downstream 0.5kb downstream 2590 true scaffold_4: 31839873-31842462 Setaria italica
Seita.4G199600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 31841963-31842462 Setaria italica
Seita.4G199600 1.0kb upstream 1.0kb upstream 3090 true scaffold_4: 31838873-31841962 Setaria italica
Seita.4G199600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 31838873-31839872 Setaria italica
Seita.4G199600 1.0kb downstream 1.0kb downstream 3090 true scaffold_4: 31839873-31842962 Setaria italica
Seita.4G199600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 31841963-31842962 Setaria italica
Seita.4G199600 2.0kb upstream 2.0kb upstream 4090 true scaffold_4: 31837873-31841962 Setaria italica
Seita.4G199600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 31837873-31839872 Setaria italica
Seita.4G199600 2.0kb downstream 2.0kb downstream 4090 true scaffold_4: 31839873-31843962 Setaria italica
Seita.4G199600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 31841963-31843962 Setaria italica
Seita.4G199600 5.0kb upstream 5.0kb upstream 7090 true scaffold_4: 31834873-31841962 Setaria italica
Seita.4G199600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 31834873-31839872 Setaria italica
Seita.4G199600 5.0kb downstream 5.0kb downstream 7090 true scaffold_4: 31839873-31846962 Setaria italica
Seita.4G199600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 31841963-31846962 Setaria italica
Seita.4G199600 10.0kb upstream 10.0kb upstream 12090 true scaffold_4: 31829873-31841962 Setaria italica
Seita.4G199600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 31829873-31839872 Setaria italica
Seita.4G199600 10.0kb downstream 10.0kb downstream 12090 true scaffold_4: 31839873-31851962 Setaria italica
Seita.4G199600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 31841963-31851962 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185049 5267 Panicoideae View MSA
124573874 5269 Grass View MSA
122045282 5273 Angiosperm View MSA
121346380 5274 Embryophyte View MSA
123423990 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.788       Low
cufflinks 90.838     High  
cufflinks 1101.307     High High
cufflinks 1382.161     High High
cufflinks 954.443     High High
cufflinks 88.071     High  
cufflinks 167.851     High  
cufflinks 438.518     High  
cufflinks 429.962     High  
cufflinks 26.839     High  
cufflinks 11.826        
cufflinks 6.693       Low
cufflinks 20.802     High  
cufflinks 1779.918     High High
cufflinks 10.807        
cufflinks 104.328     High  
cufflinks 16.292     High  
cufflinks 6.224       Low
cufflinks 150.189     High  
cufflinks 20.592     High  

0 Strain