Gene : Seita.4G202400 S. italica v2.2
Defline:  (1 of 1) PTHR10476//PTHR10476:SF11 - CHARGED MULTIVESICULAR BODY PROTEIN Genomic Order:  2024
Name:  ? Seita.4G202400 Secondary Identifier:  ? PAC:32707951
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G202400 0.5kb upstream 0.5kb upstream 4088 true scaffold_4: 32038019-32042106 Setaria italica
Seita.4G202400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 32041607-32042106 Setaria italica
Seita.4G202400 0.5kb downstream 0.5kb downstream 4088 true scaffold_4: 32037519-32041606 Setaria italica
Seita.4G202400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 32037519-32038018 Setaria italica
Seita.4G202400 1.0kb upstream 1.0kb upstream 4588 true scaffold_4: 32038019-32042606 Setaria italica
Seita.4G202400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 32041607-32042606 Setaria italica
Seita.4G202400 1.0kb downstream 1.0kb downstream 4588 true scaffold_4: 32037019-32041606 Setaria italica
Seita.4G202400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 32037019-32038018 Setaria italica
Seita.4G202400 2.0kb upstream 2.0kb upstream 5588 true scaffold_4: 32038019-32043606 Setaria italica
Seita.4G202400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 32041607-32043606 Setaria italica
Seita.4G202400 2.0kb downstream 2.0kb downstream 5588 true scaffold_4: 32036019-32041606 Setaria italica
Seita.4G202400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 32036019-32038018 Setaria italica
Seita.4G202400 5.0kb upstream 5.0kb upstream 8588 true scaffold_4: 32038019-32046606 Setaria italica
Seita.4G202400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 32041607-32046606 Setaria italica
Seita.4G202400 5.0kb downstream 5.0kb downstream 8588 true scaffold_4: 32033019-32041606 Setaria italica
Seita.4G202400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 32033019-32038018 Setaria italica
Seita.4G202400 10.0kb upstream 10.0kb upstream 13588 true scaffold_4: 32038019-32051606 Setaria italica
Seita.4G202400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 32041607-32051606 Setaria italica
Seita.4G202400 10.0kb downstream 10.0kb downstream 13588 true scaffold_4: 32028019-32041606 Setaria italica
Seita.4G202400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 32028019-32038018 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178383 5267 Panicoideae View MSA
124580492 5269 Grass View MSA
122044262 5273 Angiosperm View MSA
121349635 5274 Embryophyte View MSA
123427092 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.737     High  
cufflinks 22.873     High  
cufflinks 18.215     High Low
cufflinks 18.364     High Low
cufflinks 25.751     High  
cufflinks 22.742     High  
cufflinks 23.551     High  
cufflinks 22.286     High  
cufflinks 23.28     High  
cufflinks 32.445     High High
cufflinks 24.54     High  
cufflinks 29.89     High High
cufflinks 24.615     High  
cufflinks 33.547     High High
cufflinks 30.585     High High
cufflinks 19.773     High Low
cufflinks 27.614     High  
cufflinks 25.705     High  
cufflinks 25.653     High  
cufflinks 28.867     High  

0 Strain