Gene : Seita.4G200900 S. italica v2.2
Defline:  (1 of 1) PTHR15414 - OS-9-RELATED Genomic Order:  2009
Name:  ? Seita.4G200900 Secondary Identifier:  ? PAC:32709076
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G200900 0.5kb upstream 0.5kb upstream 4675 true scaffold_4: 31921121-31925795 Setaria italica
Seita.4G200900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 31921121-31921620 Setaria italica
Seita.4G200900 0.5kb downstream 0.5kb downstream 4675 true scaffold_4: 31921621-31926295 Setaria italica
Seita.4G200900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 31925796-31926295 Setaria italica
Seita.4G200900 1.0kb upstream 1.0kb upstream 5175 true scaffold_4: 31920621-31925795 Setaria italica
Seita.4G200900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 31920621-31921620 Setaria italica
Seita.4G200900 1.0kb downstream 1.0kb downstream 5175 true scaffold_4: 31921621-31926795 Setaria italica
Seita.4G200900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 31925796-31926795 Setaria italica
Seita.4G200900 2.0kb upstream 2.0kb upstream 6175 true scaffold_4: 31919621-31925795 Setaria italica
Seita.4G200900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 31919621-31921620 Setaria italica
Seita.4G200900 2.0kb downstream 2.0kb downstream 6175 true scaffold_4: 31921621-31927795 Setaria italica
Seita.4G200900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 31925796-31927795 Setaria italica
Seita.4G200900 5.0kb upstream 5.0kb upstream 9175 true scaffold_4: 31916621-31925795 Setaria italica
Seita.4G200900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 31916621-31921620 Setaria italica
Seita.4G200900 5.0kb downstream 5.0kb downstream 9175 true scaffold_4: 31921621-31930795 Setaria italica
Seita.4G200900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 31925796-31930795 Setaria italica
Seita.4G200900 10.0kb upstream 10.0kb upstream 14175 true scaffold_4: 31911621-31925795 Setaria italica
Seita.4G200900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 31911621-31921620 Setaria italica
Seita.4G200900 10.0kb downstream 10.0kb downstream 14175 true scaffold_4: 31921621-31935795 Setaria italica
Seita.4G200900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 31925796-31935795 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026793 5273 Angiosperm View MSA
122196644 5267 Panicoideae View MSA
124579923 5269 Grass View MSA
121348244 5274 Embryophyte View MSA
123425730 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.993        
cufflinks 14.936     High High
cufflinks 10.811     High  
cufflinks 10.737        
cufflinks 8.861       Low
cufflinks 14.155     High  
cufflinks 8.704       Low
cufflinks 10.787        
cufflinks 8.954       Low
cufflinks 14.595        
cufflinks 11.602        
cufflinks 14.674     High  
cufflinks 15.182     High High
cufflinks 12.755        
cufflinks 16.278     High High
cufflinks 8.428       Low
cufflinks 15.75     High High
cufflinks 9.696        
cufflinks 10.187        
cufflinks 13.212        

0 Strain