Gene : Seita.4G201000 S. italica v2.2
Defline:  (1 of 1) PF04192 - Utp21 specific WD40 associated putative domain (Utp21) Genomic Order:  2010
Name:  ? Seita.4G201000 Secondary Identifier:  ? PAC:32709259
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G201000 0.5kb upstream 0.5kb upstream 12468 true scaffold_4: 31925836-31938303 Setaria italica
Seita.4G201000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 31937804-31938303 Setaria italica
Seita.4G201000 0.5kb downstream 0.5kb downstream 12468 true scaffold_4: 31925336-31937803 Setaria italica
Seita.4G201000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 31925336-31925835 Setaria italica
Seita.4G201000 1.0kb upstream 1.0kb upstream 12968 true scaffold_4: 31925836-31938803 Setaria italica
Seita.4G201000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 31937804-31938803 Setaria italica
Seita.4G201000 1.0kb downstream 1.0kb downstream 12968 true scaffold_4: 31924836-31937803 Setaria italica
Seita.4G201000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 31924836-31925835 Setaria italica
Seita.4G201000 2.0kb upstream 2.0kb upstream 13968 true scaffold_4: 31925836-31939803 Setaria italica
Seita.4G201000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 31937804-31939803 Setaria italica
Seita.4G201000 2.0kb downstream 2.0kb downstream 13968 true scaffold_4: 31923836-31937803 Setaria italica
Seita.4G201000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 31923836-31925835 Setaria italica
Seita.4G201000 5.0kb upstream 5.0kb upstream 16968 true scaffold_4: 31925836-31942803 Setaria italica
Seita.4G201000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 31937804-31942803 Setaria italica
Seita.4G201000 5.0kb downstream 5.0kb downstream 16968 true scaffold_4: 31920836-31937803 Setaria italica
Seita.4G201000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 31920836-31925835 Setaria italica
Seita.4G201000 10.0kb upstream 10.0kb upstream 21968 true scaffold_4: 31925836-31947803 Setaria italica
Seita.4G201000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 31937804-31947803 Setaria italica
Seita.4G201000 10.0kb downstream 10.0kb downstream 21968 true scaffold_4: 31915836-31937803 Setaria italica
Seita.4G201000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 31915836-31925835 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185891 5267 Panicoideae View MSA
124577339 5269 Grass View MSA
122041805 5273 Angiosperm View MSA
121346831 5274 Embryophyte View MSA
123424252 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.685       High
cufflinks 3.341        
cufflinks 1.796        
cufflinks 0.758       Low
cufflinks 1.464       Low
cufflinks 3.571        
cufflinks 2.251        
cufflinks 2.178        
cufflinks 3.592        
cufflinks 2.559        
cufflinks 3.917        
cufflinks 3.249        
cufflinks 2.283        
cufflinks 2.735        
cufflinks 3.731        
cufflinks 2.906        
cufflinks 3.734        
cufflinks 3.612        
cufflinks 0.985       Low
cufflinks 3.507        

0 Strain