Gene : Seita.5G006000 S. italica v2.2
Defline:  (1 of 1) PTHR10774//PTHR10774:SF70 - EXTENDED SYNAPTOTAGMIN-RELATED Genomic Order:  60
Name:  ? Seita.5G006000 Secondary Identifier:  ? PAC:32682382
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G006000 0.5kb upstream 0.5kb upstream 6091 true scaffold_5: 425689-431779 Setaria italica
Seita.5G006000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 425689-426188 Setaria italica
Seita.5G006000 0.5kb downstream 0.5kb downstream 6091 true scaffold_5: 426189-432279 Setaria italica
Seita.5G006000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 431780-432279 Setaria italica
Seita.5G006000 1.0kb upstream 1.0kb upstream 6591 true scaffold_5: 425189-431779 Setaria italica
Seita.5G006000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 425189-426188 Setaria italica
Seita.5G006000 1.0kb downstream 1.0kb downstream 6591 true scaffold_5: 426189-432779 Setaria italica
Seita.5G006000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 431780-432779 Setaria italica
Seita.5G006000 2.0kb upstream 2.0kb upstream 7591 true scaffold_5: 424189-431779 Setaria italica
Seita.5G006000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 424189-426188 Setaria italica
Seita.5G006000 2.0kb downstream 2.0kb downstream 7591 true scaffold_5: 426189-433779 Setaria italica
Seita.5G006000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 431780-433779 Setaria italica
Seita.5G006000 5.0kb upstream 5.0kb upstream 10591 true scaffold_5: 421189-431779 Setaria italica
Seita.5G006000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 421189-426188 Setaria italica
Seita.5G006000 5.0kb downstream 5.0kb downstream 10591 true scaffold_5: 426189-436779 Setaria italica
Seita.5G006000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 431780-436779 Setaria italica
Seita.5G006000 10.0kb upstream 10.0kb upstream 15591 true scaffold_5: 416189-431779 Setaria italica
Seita.5G006000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 416189-426188 Setaria italica
Seita.5G006000 10.0kb downstream 10.0kb downstream 15591 true scaffold_5: 426189-441779 Setaria italica
Seita.5G006000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 431780-441779 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197102 5267 Panicoideae View MSA
124571976 5269 Grass View MSA
122042334 5273 Angiosperm View MSA
121345597 5274 Embryophyte View MSA
123428781 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.297     High  
cufflinks 17.765     High  
cufflinks 8.445       Low
cufflinks 8.548       Low
cufflinks 8.182       Low
cufflinks 16.973     High  
cufflinks 10.318        
cufflinks 13.018        
cufflinks 8.764       Low
cufflinks 14.686        
cufflinks 18.213     High  
cufflinks 19.512     High High
cufflinks 18.026     High  
cufflinks 8.282       Low
cufflinks 19.631     High High
cufflinks 9.535        
cufflinks 19.214     High High
cufflinks 11.346     High  
cufflinks 7.849       Low
cufflinks 19.6     High High

0 Strain