Gene : Seita.5G007600 S. italica v2.2
Defline:  (1 of 1) PTHR13360:SF1 - ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 1 Genomic Order:  76
Name:  ? Seita.5G007600 Secondary Identifier:  ? PAC:32682375
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G007600 0.5kb upstream 0.5kb upstream 6010 true scaffold_5: 527852-533861 Setaria italica
Seita.5G007600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 533362-533861 Setaria italica
Seita.5G007600 0.5kb downstream 0.5kb downstream 6010 true scaffold_5: 527352-533361 Setaria italica
Seita.5G007600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 527352-527851 Setaria italica
Seita.5G007600 1.0kb upstream 1.0kb upstream 6510 true scaffold_5: 527852-534361 Setaria italica
Seita.5G007600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 533362-534361 Setaria italica
Seita.5G007600 1.0kb downstream 1.0kb downstream 6510 true scaffold_5: 526852-533361 Setaria italica
Seita.5G007600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 526852-527851 Setaria italica
Seita.5G007600 2.0kb upstream 2.0kb upstream 7510 true scaffold_5: 527852-535361 Setaria italica
Seita.5G007600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 533362-535361 Setaria italica
Seita.5G007600 2.0kb downstream 2.0kb downstream 7510 true scaffold_5: 525852-533361 Setaria italica
Seita.5G007600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 525852-527851 Setaria italica
Seita.5G007600 5.0kb upstream 5.0kb upstream 10510 true scaffold_5: 527852-538361 Setaria italica
Seita.5G007600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 533362-538361 Setaria italica
Seita.5G007600 5.0kb downstream 5.0kb downstream 10510 true scaffold_5: 522852-533361 Setaria italica
Seita.5G007600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 522852-527851 Setaria italica
Seita.5G007600 10.0kb upstream 10.0kb upstream 15510 true scaffold_5: 527852-543361 Setaria italica
Seita.5G007600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 533362-543361 Setaria italica
Seita.5G007600 10.0kb downstream 10.0kb downstream 15510 true scaffold_5: 517852-533361 Setaria italica
Seita.5G007600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 517852-527851 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181576 5267 Panicoideae View MSA
124582967 5269 Grass View MSA
122049684 5273 Angiosperm View MSA
121346215 5274 Embryophyte View MSA
123426629 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.294       High
cufflinks 5.023       High
cufflinks 3.544        
cufflinks 3.574        
cufflinks 2.921       Low
cufflinks 4.675        
cufflinks 4.183        
cufflinks 3.296        
cufflinks 2.829       Low
cufflinks 3.73        
cufflinks 3.871        
cufflinks 4.246        
cufflinks 4.009        
cufflinks 2.33       Low
cufflinks 3.684        
cufflinks 5.441       High
cufflinks 3.916        
cufflinks 5.558       High
cufflinks 2.408       Low
cufflinks 3.956        

0 Strain