Gene : Seita.5G017600 S. italica v2.2
Defline:  (1 of 4) KOG4711 - Predicted membrane protein Genomic Order:  176
Name:  ? Seita.5G017600 Secondary Identifier:  ? PAC:32684506
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G017600 0.5kb upstream 0.5kb upstream 5777 true scaffold_5: 2030274-2036050 Setaria italica
Seita.5G017600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2035551-2036050 Setaria italica
Seita.5G017600 0.5kb downstream 0.5kb downstream 5777 true scaffold_5: 2029774-2035550 Setaria italica
Seita.5G017600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2029774-2030273 Setaria italica
Seita.5G017600 1.0kb upstream 1.0kb upstream 6277 true scaffold_5: 2030274-2036550 Setaria italica
Seita.5G017600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2035551-2036550 Setaria italica
Seita.5G017600 1.0kb downstream 1.0kb downstream 6277 true scaffold_5: 2029274-2035550 Setaria italica
Seita.5G017600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2029274-2030273 Setaria italica
Seita.5G017600 2.0kb upstream 2.0kb upstream 7277 true scaffold_5: 2030274-2037550 Setaria italica
Seita.5G017600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2035551-2037550 Setaria italica
Seita.5G017600 2.0kb downstream 2.0kb downstream 7277 true scaffold_5: 2028274-2035550 Setaria italica
Seita.5G017600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2028274-2030273 Setaria italica
Seita.5G017600 5.0kb upstream 5.0kb upstream 10277 true scaffold_5: 2030274-2040550 Setaria italica
Seita.5G017600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2035551-2040550 Setaria italica
Seita.5G017600 5.0kb downstream 5.0kb downstream 10277 true scaffold_5: 2025274-2035550 Setaria italica
Seita.5G017600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2025274-2030273 Setaria italica
Seita.5G017600 10.0kb upstream 10.0kb upstream 15277 true scaffold_5: 2030274-2045550 Setaria italica
Seita.5G017600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2035551-2045550 Setaria italica
Seita.5G017600 10.0kb downstream 10.0kb downstream 15277 true scaffold_5: 2020274-2035550 Setaria italica
Seita.5G017600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2020274-2030273 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122063978 5267 Panicoideae View MSA
124590123 5269 Grass View MSA
122049569 5273 Angiosperm View MSA
121351604 5274 Embryophyte View MSA
123428514 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low Low
cufflinks 0.023     Low  
cufflinks 0.12       High
cufflinks 0.088       High
cufflinks 0.037     Low  
cufflinks 0.076     Low High
cufflinks 0.015     Low  
cufflinks 0.054     Low  
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low Low
cufflinks 0.031     Low  
cufflinks 0.032     Low  
cufflinks 0.031     Low  
cufflinks 0.025     Low  
cufflinks 0.011     Low Low
cufflinks 0.042     Low  
cufflinks 0.037     Low  
cufflinks 0.027     Low  
cufflinks 0.03     Low  

0 Strain