Gene : Seita.5G029500 S. italica v2.2
Defline:  (1 of 1) PTHR11735:SF12 - TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE, MITOCHONDRIAL-RELATED Genomic Order:  295
Name:  ? Seita.5G029500 Secondary Identifier:  ? PAC:32686247
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-1587 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G029500 0.5kb upstream 0.5kb upstream 6624 true scaffold_5: 2840186-2846809 Setaria italica
Seita.5G029500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2840186-2840685 Setaria italica
Seita.5G029500 0.5kb downstream 0.5kb downstream 6624 true scaffold_5: 2840686-2847309 Setaria italica
Seita.5G029500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2846810-2847309 Setaria italica
Seita.5G029500 1.0kb upstream 1.0kb upstream 7124 true scaffold_5: 2839686-2846809 Setaria italica
Seita.5G029500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2839686-2840685 Setaria italica
Seita.5G029500 1.0kb downstream 1.0kb downstream 7124 true scaffold_5: 2840686-2847809 Setaria italica
Seita.5G029500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2846810-2847809 Setaria italica
Seita.5G029500 2.0kb upstream 2.0kb upstream 8124 true scaffold_5: 2838686-2846809 Setaria italica
Seita.5G029500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2838686-2840685 Setaria italica
Seita.5G029500 2.0kb downstream 2.0kb downstream 8124 true scaffold_5: 2840686-2848809 Setaria italica
Seita.5G029500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2846810-2848809 Setaria italica
Seita.5G029500 5.0kb upstream 5.0kb upstream 11124 true scaffold_5: 2835686-2846809 Setaria italica
Seita.5G029500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2835686-2840685 Setaria italica
Seita.5G029500 5.0kb downstream 5.0kb downstream 11124 true scaffold_5: 2840686-2851809 Setaria italica
Seita.5G029500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2846810-2851809 Setaria italica
Seita.5G029500 10.0kb upstream 10.0kb upstream 16124 true scaffold_5: 2830686-2846809 Setaria italica
Seita.5G029500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2830686-2840685 Setaria italica
Seita.5G029500 10.0kb downstream 10.0kb downstream 16124 true scaffold_5: 2840686-2856809 Setaria italica
Seita.5G029500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2846810-2856809 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195272 5267 Panicoideae View MSA
124572506 5269 Grass View MSA
122043416 5273 Angiosperm View MSA
121345797 5274 Embryophyte View MSA
123425080 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.479        
cufflinks 2.901        
cufflinks 4.243        
cufflinks 3.934        
cufflinks 6.216       High
cufflinks 3.379        
cufflinks 5.843        
cufflinks 7.384       High
cufflinks 10.338       High
cufflinks 2.115        
cufflinks 1.989        
cufflinks 1.852       Low
cufflinks 1.6       Low
cufflinks 4.407        
cufflinks 1.5       Low
cufflinks 6.145       High
cufflinks 2.076        
cufflinks 3.647        
cufflinks 3.372        
cufflinks 1.679       Low

0 Strain