Gene : Seita.5G029100 S. italica v2.2
Defline:  (1 of 1) PTHR30620//PTHR30620:SF30 - PERIPLASMIC BETA-GLUCOSIDASE-RELATED Genomic Order:  291
Name:  ? Seita.5G029100 Secondary Identifier:  ? PAC:32682366
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G029100 0.5kb upstream 0.5kb upstream 3673 true scaffold_5: 2794046-2797718 Setaria italica
Seita.5G029100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2797219-2797718 Setaria italica
Seita.5G029100 0.5kb downstream 0.5kb downstream 3673 true scaffold_5: 2793546-2797218 Setaria italica
Seita.5G029100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2793546-2794045 Setaria italica
Seita.5G029100 1.0kb upstream 1.0kb upstream 4173 true scaffold_5: 2794046-2798218 Setaria italica
Seita.5G029100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2797219-2798218 Setaria italica
Seita.5G029100 1.0kb downstream 1.0kb downstream 4173 true scaffold_5: 2793046-2797218 Setaria italica
Seita.5G029100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2793046-2794045 Setaria italica
Seita.5G029100 2.0kb upstream 2.0kb upstream 5173 true scaffold_5: 2794046-2799218 Setaria italica
Seita.5G029100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2797219-2799218 Setaria italica
Seita.5G029100 2.0kb downstream 2.0kb downstream 5173 true scaffold_5: 2792046-2797218 Setaria italica
Seita.5G029100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2792046-2794045 Setaria italica
Seita.5G029100 5.0kb upstream 5.0kb upstream 8173 true scaffold_5: 2794046-2802218 Setaria italica
Seita.5G029100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2797219-2802218 Setaria italica
Seita.5G029100 5.0kb downstream 5.0kb downstream 8173 true scaffold_5: 2789046-2797218 Setaria italica
Seita.5G029100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2789046-2794045 Setaria italica
Seita.5G029100 10.0kb upstream 10.0kb upstream 13173 true scaffold_5: 2794046-2807218 Setaria italica
Seita.5G029100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2797219-2807218 Setaria italica
Seita.5G029100 10.0kb downstream 10.0kb downstream 13173 true scaffold_5: 2784046-2797218 Setaria italica
Seita.5G029100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2784046-2794045 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187118 5267 Panicoideae View MSA
124570976 5269 Grass View MSA
122049455 5273 Angiosperm View MSA
121311411 5274 Embryophyte View MSA
123348711 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.23        
cufflinks 3.761        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low Low
cufflinks 0.006     Low Low
cufflinks 3.677        
cufflinks 3.202        
cufflinks 1.56        
cufflinks 1.45        
cufflinks 7.709       High
cufflinks 6.122        
cufflinks 0.605        
cufflinks 1.13        
cufflinks 0.007     Low Low
cufflinks 1.874        
cufflinks 0.692        
cufflinks 0.783        
cufflinks 0.177        
cufflinks 0.009     Low Low
cufflinks 2.52        

0 Strain