Gene : Seita.5G034900 S. italica v2.2
Defline:  (1 of 1) PTHR11071:SF247 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE D Genomic Order:  349
Name:  ? Seita.5G034900 Secondary Identifier:  ? PAC:32685705
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G034900 0.5kb upstream 0.5kb upstream 4844 true scaffold_5: 3315609-3320452 Setaria italica
Seita.5G034900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 3319953-3320452 Setaria italica
Seita.5G034900 0.5kb downstream 0.5kb downstream 4844 true scaffold_5: 3315109-3319952 Setaria italica
Seita.5G034900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 3315109-3315608 Setaria italica
Seita.5G034900 1.0kb upstream 1.0kb upstream 5344 true scaffold_5: 3315609-3320952 Setaria italica
Seita.5G034900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 3319953-3320952 Setaria italica
Seita.5G034900 1.0kb downstream 1.0kb downstream 5344 true scaffold_5: 3314609-3319952 Setaria italica
Seita.5G034900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 3314609-3315608 Setaria italica
Seita.5G034900 2.0kb upstream 2.0kb upstream 6344 true scaffold_5: 3315609-3321952 Setaria italica
Seita.5G034900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 3319953-3321952 Setaria italica
Seita.5G034900 2.0kb downstream 2.0kb downstream 6344 true scaffold_5: 3313609-3319952 Setaria italica
Seita.5G034900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 3313609-3315608 Setaria italica
Seita.5G034900 5.0kb upstream 5.0kb upstream 9344 true scaffold_5: 3315609-3324952 Setaria italica
Seita.5G034900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 3319953-3324952 Setaria italica
Seita.5G034900 5.0kb downstream 5.0kb downstream 9344 true scaffold_5: 3310609-3319952 Setaria italica
Seita.5G034900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 3310609-3315608 Setaria italica
Seita.5G034900 10.0kb upstream 10.0kb upstream 14344 true scaffold_5: 3315609-3329952 Setaria italica
Seita.5G034900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 3319953-3329952 Setaria italica
Seita.5G034900 10.0kb downstream 10.0kb downstream 14344 true scaffold_5: 3305609-3319952 Setaria italica
Seita.5G034900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 3305609-3315608 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187612 5267 Panicoideae View MSA
124573831 5269 Grass View MSA
122048638 5273 Angiosperm View MSA
123428973 5275 Viridiplantae View MSA
121349242 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.294        
cufflinks 0.855        
cufflinks 0.414        
cufflinks 0.141       Low
cufflinks 1.572        
cufflinks 1.016        
cufflinks 3.871       High
cufflinks 11.954       High
cufflinks 14.137     High High
cufflinks 4.37       High
cufflinks 1.773        
cufflinks 0.352        
cufflinks 0.403        
cufflinks 1.327        
cufflinks 0.351        
cufflinks 1.499        
cufflinks 0.569        
cufflinks 0.617        
cufflinks 0.321       Low
cufflinks 0.661        

0 Strain