Gene : Seita.5G038700 S. italica v2.2
Defline:  (1 of 20) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  387
Name:  ? Seita.5G038700 Secondary Identifier:  ? PAC:32681868
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G038700 0.5kb upstream 0.5kb upstream 4438 true scaffold_5: 3561555-3565992 Setaria italica
Seita.5G038700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 3565493-3565992 Setaria italica
Seita.5G038700 0.5kb downstream 0.5kb downstream 4438 true scaffold_5: 3561055-3565492 Setaria italica
Seita.5G038700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 3561055-3561554 Setaria italica
Seita.5G038700 1.0kb upstream 1.0kb upstream 4938 true scaffold_5: 3561555-3566492 Setaria italica
Seita.5G038700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 3565493-3566492 Setaria italica
Seita.5G038700 1.0kb downstream 1.0kb downstream 4938 true scaffold_5: 3560555-3565492 Setaria italica
Seita.5G038700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 3560555-3561554 Setaria italica
Seita.5G038700 2.0kb upstream 2.0kb upstream 5938 true scaffold_5: 3561555-3567492 Setaria italica
Seita.5G038700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 3565493-3567492 Setaria italica
Seita.5G038700 2.0kb downstream 2.0kb downstream 5938 true scaffold_5: 3559555-3565492 Setaria italica
Seita.5G038700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 3559555-3561554 Setaria italica
Seita.5G038700 5.0kb upstream 5.0kb upstream 8938 true scaffold_5: 3561555-3570492 Setaria italica
Seita.5G038700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 3565493-3570492 Setaria italica
Seita.5G038700 5.0kb downstream 5.0kb downstream 8938 true scaffold_5: 3556555-3565492 Setaria italica
Seita.5G038700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 3556555-3561554 Setaria italica
Seita.5G038700 10.0kb upstream 10.0kb upstream 13938 true scaffold_5: 3561555-3575492 Setaria italica
Seita.5G038700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 3565493-3575492 Setaria italica
Seita.5G038700 10.0kb downstream 10.0kb downstream 13938 true scaffold_5: 3551555-3565492 Setaria italica
Seita.5G038700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 3551555-3561554 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184063 5267 Panicoideae View MSA
124584586 5269 Grass View MSA
122044724 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.368        
cufflinks 28.31     High High
cufflinks 16.82     High  
cufflinks 7.607       Low
cufflinks 10.853     High  
cufflinks 29.115     High High
cufflinks 11.572        
cufflinks 19.377     High  
cufflinks 18.829     High  
cufflinks 7.533       Low
cufflinks 17.073     High  
cufflinks 20.894     High  
cufflinks 10.971        
cufflinks 20.447     High  
cufflinks 24.344     High High
cufflinks 9.245       Low
cufflinks 26.626     High High
cufflinks 11.886     High  
cufflinks 8.996       Low
cufflinks 26.38     High High

0 Strain