Gene : Seita.5G038800 S. italica v2.2
Defline:  (1 of 1) PTHR23044//PTHR23044:SF35 - 3'-5' EXONUCLEASE ERI1-RELATED Genomic Order:  388
Name:  ? Seita.5G038800 Secondary Identifier:  ? PAC:32686308
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G038800 0.5kb upstream 0.5kb upstream 9671 true scaffold_5: 3566656-3576326 Setaria italica
Seita.5G038800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 3566656-3567155 Setaria italica
Seita.5G038800 0.5kb downstream 0.5kb downstream 9671 true scaffold_5: 3567156-3576826 Setaria italica
Seita.5G038800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 3576327-3576826 Setaria italica
Seita.5G038800 1.0kb upstream 1.0kb upstream 10171 true scaffold_5: 3566156-3576326 Setaria italica
Seita.5G038800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 3566156-3567155 Setaria italica
Seita.5G038800 1.0kb downstream 1.0kb downstream 10171 true scaffold_5: 3567156-3577326 Setaria italica
Seita.5G038800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 3576327-3577326 Setaria italica
Seita.5G038800 2.0kb upstream 2.0kb upstream 11171 true scaffold_5: 3565156-3576326 Setaria italica
Seita.5G038800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 3565156-3567155 Setaria italica
Seita.5G038800 2.0kb downstream 2.0kb downstream 11171 true scaffold_5: 3567156-3578326 Setaria italica
Seita.5G038800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 3576327-3578326 Setaria italica
Seita.5G038800 5.0kb upstream 5.0kb upstream 14171 true scaffold_5: 3562156-3576326 Setaria italica
Seita.5G038800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 3562156-3567155 Setaria italica
Seita.5G038800 5.0kb downstream 5.0kb downstream 14171 true scaffold_5: 3567156-3581326 Setaria italica
Seita.5G038800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 3576327-3581326 Setaria italica
Seita.5G038800 10.0kb upstream 10.0kb upstream 19171 true scaffold_5: 3557156-3576326 Setaria italica
Seita.5G038800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 3557156-3567155 Setaria italica
Seita.5G038800 10.0kb downstream 10.0kb downstream 19171 true scaffold_5: 3567156-3586326 Setaria italica
Seita.5G038800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 3576327-3586326 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185227 5267 Panicoideae View MSA
124570147 5269 Grass View MSA
122048554 5273 Angiosperm View MSA
121348288 5274 Embryophyte View MSA
123427985 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.119     High High
cufflinks 29.581     High  
cufflinks 32.415     High High
cufflinks 32.768     High High
cufflinks 26.74     High  
cufflinks 30.48     High  
cufflinks 23.847     High  
cufflinks 18.297     High Low
cufflinks 17.496     High Low
cufflinks 20.778     High Low
cufflinks 24.586     High  
cufflinks 24.326     High  
cufflinks 25.831     High  
cufflinks 20.058     High Low
cufflinks 22.846     High  
cufflinks 31.94     High High
cufflinks 25.456     High  
cufflinks 32.847     High High
cufflinks 26.142     High  
cufflinks 22.447     High  

0 Strain