Gene : Seita.5G041900 S. italica v2.2
Defline:  (1 of 1) PTHR10202//PTHR10202:SF15 - PRESENILIN Genomic Order:  419
Name:  ? Seita.5G041900 Secondary Identifier:  ? PAC:32684106
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G041900 0.5kb upstream 0.5kb upstream 2291 true scaffold_5: 3789624-3791914 Setaria italica
Seita.5G041900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 3789624-3790123 Setaria italica
Seita.5G041900 0.5kb downstream 0.5kb downstream 2291 true scaffold_5: 3790124-3792414 Setaria italica
Seita.5G041900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 3791915-3792414 Setaria italica
Seita.5G041900 1.0kb upstream 1.0kb upstream 2791 true scaffold_5: 3789124-3791914 Setaria italica
Seita.5G041900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 3789124-3790123 Setaria italica
Seita.5G041900 1.0kb downstream 1.0kb downstream 2791 true scaffold_5: 3790124-3792914 Setaria italica
Seita.5G041900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 3791915-3792914 Setaria italica
Seita.5G041900 2.0kb upstream 2.0kb upstream 3791 true scaffold_5: 3788124-3791914 Setaria italica
Seita.5G041900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 3788124-3790123 Setaria italica
Seita.5G041900 2.0kb downstream 2.0kb downstream 3791 true scaffold_5: 3790124-3793914 Setaria italica
Seita.5G041900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 3791915-3793914 Setaria italica
Seita.5G041900 5.0kb upstream 5.0kb upstream 6791 true scaffold_5: 3785124-3791914 Setaria italica
Seita.5G041900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 3785124-3790123 Setaria italica
Seita.5G041900 5.0kb downstream 5.0kb downstream 6791 true scaffold_5: 3790124-3796914 Setaria italica
Seita.5G041900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 3791915-3796914 Setaria italica
Seita.5G041900 10.0kb upstream 10.0kb upstream 11791 true scaffold_5: 3780124-3791914 Setaria italica
Seita.5G041900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 3780124-3790123 Setaria italica
Seita.5G041900 10.0kb downstream 10.0kb downstream 11791 true scaffold_5: 3790124-3801914 Setaria italica
Seita.5G041900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 3791915-3801914 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179070 5267 Panicoideae View MSA
124581319 5269 Grass View MSA
122049657 5273 Angiosperm View MSA
121347498 5274 Embryophyte View MSA
123424512 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.319        
cufflinks 7.236       High
cufflinks 3.269        
cufflinks 2.891       Low
cufflinks 2.668       Low
cufflinks 7.115       High
cufflinks 4.751        
cufflinks 3.657        
cufflinks 2.754       Low
cufflinks 4.83        
cufflinks 5.14        
cufflinks 3.737        
cufflinks 3.488        
cufflinks 5.041        
cufflinks 5.842       High
cufflinks 2.931       Low
cufflinks 5.272        
cufflinks 2.998       Low
cufflinks 3.828        
cufflinks 5.147        

0 Strain