Gene : Seita.4G274400 S. italica v2.2
Defline:  (1 of 2) PTHR11071//PTHR11071:SF280 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE Genomic Order:  2744
Name:  ? Seita.4G274400 Secondary Identifier:  ? PAC:32707111
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G274400 0.5kb upstream 0.5kb upstream 1850 true scaffold_4: 39129121-39130970 Setaria italica
Seita.4G274400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39129121-39129620 Setaria italica
Seita.4G274400 0.5kb downstream 0.5kb downstream 1850 true scaffold_4: 39129621-39131470 Setaria italica
Seita.4G274400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 39130971-39131470 Setaria italica
Seita.4G274400 1.0kb upstream 1.0kb upstream 2350 true scaffold_4: 39128621-39130970 Setaria italica
Seita.4G274400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39128621-39129620 Setaria italica
Seita.4G274400 1.0kb downstream 1.0kb downstream 2350 true scaffold_4: 39129621-39131970 Setaria italica
Seita.4G274400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 39130971-39131970 Setaria italica
Seita.4G274400 2.0kb upstream 2.0kb upstream 3350 true scaffold_4: 39127621-39130970 Setaria italica
Seita.4G274400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39127621-39129620 Setaria italica
Seita.4G274400 2.0kb downstream 2.0kb downstream 3350 true scaffold_4: 39129621-39132970 Setaria italica
Seita.4G274400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 39130971-39132970 Setaria italica
Seita.4G274400 5.0kb upstream 5.0kb upstream 6350 true scaffold_4: 39124621-39130970 Setaria italica
Seita.4G274400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39124621-39129620 Setaria italica
Seita.4G274400 5.0kb downstream 5.0kb downstream 6350 true scaffold_4: 39129621-39135970 Setaria italica
Seita.4G274400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 39130971-39135970 Setaria italica
Seita.4G274400 10.0kb upstream 10.0kb upstream 11350 true scaffold_4: 39119621-39130970 Setaria italica
Seita.4G274400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39119621-39129620 Setaria italica
Seita.4G274400 10.0kb downstream 10.0kb downstream 11350 true scaffold_4: 39129621-39140970 Setaria italica
Seita.4G274400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 39130971-39140970 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122200197 5267 Panicoideae View MSA
124468190 5269 Grass View MSA
122041792 5273 Angiosperm View MSA
123428973 5275 Viridiplantae View MSA
121346769 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.051     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.173       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.012     Low  

0 Strain