Gene : Seita.4G275300 S. italica v2.2
Defline:  (1 of 1) PTHR22990 - F-BOX ONLY PROTEIN Genomic Order:  2753
Name:  ? Seita.4G275300 Secondary Identifier:  ? PAC:32707073
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G275300 0.5kb upstream 0.5kb upstream 3879 true scaffold_4: 39185038-39188916 Setaria italica
Seita.4G275300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39185038-39185537 Setaria italica
Seita.4G275300 0.5kb downstream 0.5kb downstream 3879 true scaffold_4: 39185538-39189416 Setaria italica
Seita.4G275300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 39188917-39189416 Setaria italica
Seita.4G275300 1.0kb upstream 1.0kb upstream 4379 true scaffold_4: 39184538-39188916 Setaria italica
Seita.4G275300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39184538-39185537 Setaria italica
Seita.4G275300 1.0kb downstream 1.0kb downstream 4379 true scaffold_4: 39185538-39189916 Setaria italica
Seita.4G275300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 39188917-39189916 Setaria italica
Seita.4G275300 2.0kb upstream 2.0kb upstream 5379 true scaffold_4: 39183538-39188916 Setaria italica
Seita.4G275300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39183538-39185537 Setaria italica
Seita.4G275300 2.0kb downstream 2.0kb downstream 5379 true scaffold_4: 39185538-39190916 Setaria italica
Seita.4G275300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 39188917-39190916 Setaria italica
Seita.4G275300 5.0kb upstream 5.0kb upstream 8379 true scaffold_4: 39180538-39188916 Setaria italica
Seita.4G275300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39180538-39185537 Setaria italica
Seita.4G275300 5.0kb downstream 5.0kb downstream 8379 true scaffold_4: 39185538-39193916 Setaria italica
Seita.4G275300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 39188917-39193916 Setaria italica
Seita.4G275300 10.0kb upstream 10.0kb upstream 13379 true scaffold_4: 39175538-39188916 Setaria italica
Seita.4G275300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39175538-39185537 Setaria italica
Seita.4G275300 10.0kb downstream 10.0kb downstream 13379 true scaffold_4: 39185538-39198916 Setaria italica
Seita.4G275300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 39188917-39198916 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041271 5273 Angiosperm View MSA
122178719 5267 Panicoideae View MSA
124579897 5269 Grass View MSA
121344604 5274 Embryophyte View MSA
123428680 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.211     High High
cufflinks 47.266     High High
cufflinks 19.941     High Low
cufflinks 22.015     High Low
cufflinks 24.247     High  
cufflinks 47.472     High High
cufflinks 26.999     High  
cufflinks 25.148     High  
cufflinks 29.482     High  
cufflinks 27.762     High  
cufflinks 32.665     High  
cufflinks 28.938     High  
cufflinks 30.481     High  
cufflinks 22.501     High Low
cufflinks 28.368     High  
cufflinks 24.876     High  
cufflinks 32.342     High  
cufflinks 25.836     High  
cufflinks 24.355     High  
cufflinks 29.91     High  

0 Strain