Gene : Seita.4G275500 S. italica v2.2
Defline:  (1 of 3) PF03350 - Uncharacterized protein family, UPF0114 (UPF0114) Genomic Order:  2755
Name:  ? Seita.4G275500 Secondary Identifier:  ? PAC:32708571
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G275500 0.5kb upstream 0.5kb upstream 2783 true scaffold_4: 39206982-39209764 Setaria italica
Seita.4G275500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39209265-39209764 Setaria italica
Seita.4G275500 0.5kb downstream 0.5kb downstream 2783 true scaffold_4: 39206482-39209264 Setaria italica
Seita.4G275500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 39206482-39206981 Setaria italica
Seita.4G275500 1.0kb upstream 1.0kb upstream 3283 true scaffold_4: 39206982-39210264 Setaria italica
Seita.4G275500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39209265-39210264 Setaria italica
Seita.4G275500 1.0kb downstream 1.0kb downstream 3283 true scaffold_4: 39205982-39209264 Setaria italica
Seita.4G275500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 39205982-39206981 Setaria italica
Seita.4G275500 2.0kb upstream 2.0kb upstream 4283 true scaffold_4: 39206982-39211264 Setaria italica
Seita.4G275500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39209265-39211264 Setaria italica
Seita.4G275500 2.0kb downstream 2.0kb downstream 4283 true scaffold_4: 39204982-39209264 Setaria italica
Seita.4G275500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 39204982-39206981 Setaria italica
Seita.4G275500 5.0kb upstream 5.0kb upstream 7283 true scaffold_4: 39206982-39214264 Setaria italica
Seita.4G275500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39209265-39214264 Setaria italica
Seita.4G275500 5.0kb downstream 5.0kb downstream 7283 true scaffold_4: 39201982-39209264 Setaria italica
Seita.4G275500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 39201982-39206981 Setaria italica
Seita.4G275500 10.0kb upstream 10.0kb upstream 12283 true scaffold_4: 39206982-39219264 Setaria italica
Seita.4G275500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39209265-39219264 Setaria italica
Seita.4G275500 10.0kb downstream 10.0kb downstream 12283 true scaffold_4: 39196982-39209264 Setaria italica
Seita.4G275500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 39196982-39206981 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197499 5267 Panicoideae View MSA
124577291 5269 Grass View MSA
122048009 5273 Angiosperm View MSA
121348495 5274 Embryophyte View MSA
123426050 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.101        
cufflinks 9.824        
cufflinks 62.354     High High
cufflinks 80.331     High High
cufflinks 82.466     High High
cufflinks 6.528        
cufflinks 31.502     High  
cufflinks 45.822     High  
cufflinks 38.239     High  
cufflinks 5.546        
cufflinks 3.364       Low
cufflinks 3.573        
cufflinks 6.822        
cufflinks 35.739     High  
cufflinks 2.918       Low
cufflinks 46.936     High  
cufflinks 2.295       Low
cufflinks 11.52     High  
cufflinks 109.888     High High
cufflinks 1.604       Low

0 Strain