Gene : Seita.4G279400 S. italica v2.2
Defline:  (1 of 2) PTHR24073:SF345 - RAS-RELATED PROTEIN RABA3 Genomic Order:  2794
Name:  ? Seita.4G279400 Secondary Identifier:  ? PAC:32709591
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G279400 0.5kb upstream 0.5kb upstream 1409 true scaffold_4: 39499833-39501241 Setaria italica
Seita.4G279400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39500742-39501241 Setaria italica
Seita.4G279400 0.5kb downstream 0.5kb downstream 1409 true scaffold_4: 39499333-39500741 Setaria italica
Seita.4G279400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 39499333-39499832 Setaria italica
Seita.4G279400 1.0kb upstream 1.0kb upstream 1909 true scaffold_4: 39499833-39501741 Setaria italica
Seita.4G279400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39500742-39501741 Setaria italica
Seita.4G279400 1.0kb downstream 1.0kb downstream 1909 true scaffold_4: 39498833-39500741 Setaria italica
Seita.4G279400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 39498833-39499832 Setaria italica
Seita.4G279400 2.0kb upstream 2.0kb upstream 2909 true scaffold_4: 39499833-39502741 Setaria italica
Seita.4G279400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39500742-39502741 Setaria italica
Seita.4G279400 2.0kb downstream 2.0kb downstream 2909 true scaffold_4: 39497833-39500741 Setaria italica
Seita.4G279400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 39497833-39499832 Setaria italica
Seita.4G279400 5.0kb upstream 5.0kb upstream 5909 true scaffold_4: 39499833-39505741 Setaria italica
Seita.4G279400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39500742-39505741 Setaria italica
Seita.4G279400 5.0kb downstream 5.0kb downstream 5909 true scaffold_4: 39494833-39500741 Setaria italica
Seita.4G279400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 39494833-39499832 Setaria italica
Seita.4G279400 10.0kb upstream 10.0kb upstream 10909 true scaffold_4: 39499833-39510741 Setaria italica
Seita.4G279400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39500742-39510741 Setaria italica
Seita.4G279400 10.0kb downstream 10.0kb downstream 10909 true scaffold_4: 39489833-39500741 Setaria italica
Seita.4G279400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 39489833-39499832 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181933 5267 Panicoideae View MSA
124585626 5269 Grass View MSA
122042184 5273 Angiosperm View MSA
121351595 5274 Embryophyte View MSA
123426852 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.138        
cufflinks 2.821       High
cufflinks 0.256        
cufflinks 0.414        
cufflinks 0.205        
cufflinks 4.327       High
cufflinks 0.017     Low Low
cufflinks 0.014     Low Low
cufflinks 0.053     Low Low
cufflinks 2.607       High
cufflinks 0.315        
cufflinks 0.503        
cufflinks 2.327       High
cufflinks 0.06     Low  
cufflinks 1.359        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.425        
cufflinks 0.093     Low  
cufflinks 0.115        
cufflinks 1.261        

0 Strain