Gene : Seita.5G087900 S. italica v2.2
Defline:  (1 of 1) PTHR10759//PTHR10759:SF6 - 60S RIBOSOMAL PROTEIN L34 Genomic Order:  879
Name:  ? Seita.5G087900 Secondary Identifier:  ? PAC:32685361
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G087900 0.5kb upstream 0.5kb upstream 3810 true scaffold_5: 7471632-7475441 Setaria italica
Seita.5G087900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 7474942-7475441 Setaria italica
Seita.5G087900 0.5kb downstream 0.5kb downstream 3810 true scaffold_5: 7471132-7474941 Setaria italica
Seita.5G087900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 7471132-7471631 Setaria italica
Seita.5G087900 1.0kb upstream 1.0kb upstream 4310 true scaffold_5: 7471632-7475941 Setaria italica
Seita.5G087900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 7474942-7475941 Setaria italica
Seita.5G087900 1.0kb downstream 1.0kb downstream 4310 true scaffold_5: 7470632-7474941 Setaria italica
Seita.5G087900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 7470632-7471631 Setaria italica
Seita.5G087900 2.0kb upstream 2.0kb upstream 5310 true scaffold_5: 7471632-7476941 Setaria italica
Seita.5G087900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 7474942-7476941 Setaria italica
Seita.5G087900 2.0kb downstream 2.0kb downstream 5310 true scaffold_5: 7469632-7474941 Setaria italica
Seita.5G087900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 7469632-7471631 Setaria italica
Seita.5G087900 5.0kb upstream 5.0kb upstream 8310 true scaffold_5: 7471632-7479941 Setaria italica
Seita.5G087900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 7474942-7479941 Setaria italica
Seita.5G087900 5.0kb downstream 5.0kb downstream 8310 true scaffold_5: 7466632-7474941 Setaria italica
Seita.5G087900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 7466632-7471631 Setaria italica
Seita.5G087900 10.0kb upstream 10.0kb upstream 13310 true scaffold_5: 7471632-7484941 Setaria italica
Seita.5G087900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 7474942-7484941 Setaria italica
Seita.5G087900 10.0kb downstream 10.0kb downstream 13310 true scaffold_5: 7461632-7474941 Setaria italica
Seita.5G087900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 7461632-7471631 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186750 5267 Panicoideae View MSA
124578875 5269 Grass View MSA
122042848 5273 Angiosperm View MSA
121310034 5274 Embryophyte View MSA
123347637 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.037       High
cufflinks 2.693        
cufflinks 0.371       Low
cufflinks 0.629       Low
cufflinks 0.763       Low
cufflinks 4.18        
cufflinks 2.365        
cufflinks 2.279        
cufflinks 2.448        
cufflinks 3.949        
cufflinks 3.242        
cufflinks 2.991        
cufflinks 3.476        
cufflinks 1.794        
cufflinks 2.116        
cufflinks 2.763        
cufflinks 2.029        
cufflinks 5.333       High
cufflinks 1.215        
cufflinks 2.418        

0 Strain