Gene : Seita.5G087000 S. italica v2.2
Defline:  (1 of 2) 5.3.1.8 - Mannose-6-phosphate isomerase / Phosphomannose isomerase Genomic Order:  870
Name:  ? Seita.5G087000 Secondary Identifier:  ? PAC:32684197
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica MANNCAT-PWY Setaria italica pathologic  
Sitalica PWY-3861 Setaria italica pathologic  
Sitalica PWY-3881 Setaria italica pathologic  
Sitalica PWY-5659 Setaria italica pathologic  
Sitalica PWY-882 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G087000 0.5kb upstream 0.5kb upstream 7113 true scaffold_5: 7340041-7347153 Setaria italica
Seita.5G087000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 7340041-7340540 Setaria italica
Seita.5G087000 0.5kb downstream 0.5kb downstream 7113 true scaffold_5: 7340541-7347653 Setaria italica
Seita.5G087000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 7347154-7347653 Setaria italica
Seita.5G087000 1.0kb upstream 1.0kb upstream 7613 true scaffold_5: 7339541-7347153 Setaria italica
Seita.5G087000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 7339541-7340540 Setaria italica
Seita.5G087000 1.0kb downstream 1.0kb downstream 7613 true scaffold_5: 7340541-7348153 Setaria italica
Seita.5G087000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 7347154-7348153 Setaria italica
Seita.5G087000 2.0kb upstream 2.0kb upstream 8613 true scaffold_5: 7338541-7347153 Setaria italica
Seita.5G087000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 7338541-7340540 Setaria italica
Seita.5G087000 2.0kb downstream 2.0kb downstream 8613 true scaffold_5: 7340541-7349153 Setaria italica
Seita.5G087000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 7347154-7349153 Setaria italica
Seita.5G087000 5.0kb upstream 5.0kb upstream 11613 true scaffold_5: 7335541-7347153 Setaria italica
Seita.5G087000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 7335541-7340540 Setaria italica
Seita.5G087000 5.0kb downstream 5.0kb downstream 11613 true scaffold_5: 7340541-7352153 Setaria italica
Seita.5G087000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 7347154-7352153 Setaria italica
Seita.5G087000 10.0kb upstream 10.0kb upstream 16613 true scaffold_5: 7330541-7347153 Setaria italica
Seita.5G087000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 7330541-7340540 Setaria italica
Seita.5G087000 10.0kb downstream 10.0kb downstream 16613 true scaffold_5: 7340541-7357153 Setaria italica
Seita.5G087000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 7347154-7357153 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187972 5267 Panicoideae View MSA
124568309 5269 Grass View MSA
122046941 5273 Angiosperm View MSA
121350841 5274 Embryophyte View MSA
123423837 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.638       Low
cufflinks 3.215        
cufflinks 19.069     High High
cufflinks 16.686     High High
cufflinks 5.12        
cufflinks 2.638        
cufflinks 1.524        
cufflinks 3.885        
cufflinks 1.219        
cufflinks 1.362        
cufflinks 0.655       Low
cufflinks 2.603        
cufflinks 1.604        
cufflinks 8.448       High
cufflinks 3.74        
cufflinks 0.741       Low
cufflinks 3.774        
cufflinks 2.636        
cufflinks 17.014     High High
cufflinks 3.838        

0 Strain