Gene : Seita.5G118600 S. italica v2.2
Defline:  (1 of 33) PF10250 - GDP-fucose protein O-fucosyltransferase (O-FucT) Genomic Order:  1186
Name:  ? Seita.5G118600 Secondary Identifier:  ? PAC:32683299
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G118600 0.5kb upstream 0.5kb upstream 5986 true scaffold_5: 9934743-9940728 Setaria italica
Seita.5G118600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 9934743-9935242 Setaria italica
Seita.5G118600 0.5kb downstream 0.5kb downstream 5986 true scaffold_5: 9935243-9941228 Setaria italica
Seita.5G118600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 9940729-9941228 Setaria italica
Seita.5G118600 1.0kb upstream 1.0kb upstream 6486 true scaffold_5: 9934243-9940728 Setaria italica
Seita.5G118600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 9934243-9935242 Setaria italica
Seita.5G118600 1.0kb downstream 1.0kb downstream 6486 true scaffold_5: 9935243-9941728 Setaria italica
Seita.5G118600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 9940729-9941728 Setaria italica
Seita.5G118600 2.0kb upstream 2.0kb upstream 7486 true scaffold_5: 9933243-9940728 Setaria italica
Seita.5G118600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 9933243-9935242 Setaria italica
Seita.5G118600 2.0kb downstream 2.0kb downstream 7486 true scaffold_5: 9935243-9942728 Setaria italica
Seita.5G118600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 9940729-9942728 Setaria italica
Seita.5G118600 5.0kb upstream 5.0kb upstream 10486 true scaffold_5: 9930243-9940728 Setaria italica
Seita.5G118600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 9930243-9935242 Setaria italica
Seita.5G118600 5.0kb downstream 5.0kb downstream 10486 true scaffold_5: 9935243-9945728 Setaria italica
Seita.5G118600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 9940729-9945728 Setaria italica
Seita.5G118600 10.0kb upstream 10.0kb upstream 15486 true scaffold_5: 9925243-9940728 Setaria italica
Seita.5G118600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 9925243-9935242 Setaria italica
Seita.5G118600 10.0kb downstream 10.0kb downstream 15486 true scaffold_5: 9935243-9950728 Setaria italica
Seita.5G118600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 9940729-9950728 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181364 5267 Panicoideae View MSA
124568658 5269 Grass View MSA
122046099 5273 Angiosperm View MSA
121348832 5274 Embryophyte View MSA
123381034 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.267        
cufflinks 6.382        
cufflinks 0.996       Low
cufflinks 1.539        
cufflinks 2.193        
cufflinks 7.467        
cufflinks 3.234        
cufflinks 3.471        
cufflinks 3.608        
cufflinks 4.391        
cufflinks 3.649        
cufflinks 8.558       High
cufflinks 11.94       High
cufflinks 0.471       Low
cufflinks 6.852        
cufflinks 2.819        
cufflinks 7.674        
cufflinks 2.657        
cufflinks 0.712       Low
cufflinks 8.693       High

0 Strain