Gene : Seita.5G046500 S. italica v2.2
Defline:  (1 of 1) PTHR15245:SF23 - PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1-RELATED Genomic Order:  465
Name:  ? Seita.5G046500 Secondary Identifier:  ? PAC:32683850
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6351 Setaria italica pathologic  
Sitalica PWY-6352 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G046500 0.5kb upstream 0.5kb upstream 2323 true scaffold_5: 4179354-4181676 Setaria italica
Seita.5G046500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 4181177-4181676 Setaria italica
Seita.5G046500 0.5kb downstream 0.5kb downstream 2323 true scaffold_5: 4178854-4181176 Setaria italica
Seita.5G046500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 4178854-4179353 Setaria italica
Seita.5G046500 1.0kb upstream 1.0kb upstream 2823 true scaffold_5: 4179354-4182176 Setaria italica
Seita.5G046500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 4181177-4182176 Setaria italica
Seita.5G046500 1.0kb downstream 1.0kb downstream 2823 true scaffold_5: 4178354-4181176 Setaria italica
Seita.5G046500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 4178354-4179353 Setaria italica
Seita.5G046500 2.0kb upstream 2.0kb upstream 3823 true scaffold_5: 4179354-4183176 Setaria italica
Seita.5G046500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 4181177-4183176 Setaria italica
Seita.5G046500 2.0kb downstream 2.0kb downstream 3823 true scaffold_5: 4177354-4181176 Setaria italica
Seita.5G046500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 4177354-4179353 Setaria italica
Seita.5G046500 5.0kb upstream 5.0kb upstream 6823 true scaffold_5: 4179354-4186176 Setaria italica
Seita.5G046500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 4181177-4186176 Setaria italica
Seita.5G046500 5.0kb downstream 5.0kb downstream 6823 true scaffold_5: 4174354-4181176 Setaria italica
Seita.5G046500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 4174354-4179353 Setaria italica
Seita.5G046500 10.0kb upstream 10.0kb upstream 11823 true scaffold_5: 4179354-4191176 Setaria italica
Seita.5G046500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 4181177-4191176 Setaria italica
Seita.5G046500 10.0kb downstream 10.0kb downstream 11823 true scaffold_5: 4169354-4181176 Setaria italica
Seita.5G046500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 4169354-4179353 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028211 5273 Angiosperm View MSA
122183755 5267 Panicoideae View MSA
124586794 5269 Grass View MSA
123429040 5275 Viridiplantae View MSA
121297732 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.045     Low  
cufflinks 0.007     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.139       High
cufflinks 0.006     Low Low
cufflinks 0.028     Low  
cufflinks 0.02     Low  
cufflinks 0.046     Low  
cufflinks 0.068     Low  
cufflinks 0.038     Low  
cufflinks 0.128     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.077     Low  
cufflinks 0.011     Low Low
cufflinks 0.058     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  
cufflinks 0.138       High

0 Strain