Gene : Seita.5G045000 S. italica v2.2
Defline:  (1 of 1) PTHR10953:SF6 - NEDD8-ACTIVATING ENZYME E1 CATALYTIC SUBUNIT Genomic Order:  450
Name:  ? Seita.5G045000 Secondary Identifier:  ? PAC:32681111
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G045000 0.5kb upstream 0.5kb upstream 5298 true scaffold_5: 4119054-4124351 Setaria italica
Seita.5G045000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 4119054-4119553 Setaria italica
Seita.5G045000 0.5kb downstream 0.5kb downstream 5298 true scaffold_5: 4119554-4124851 Setaria italica
Seita.5G045000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 4124352-4124851 Setaria italica
Seita.5G045000 1.0kb upstream 1.0kb upstream 5798 true scaffold_5: 4118554-4124351 Setaria italica
Seita.5G045000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 4118554-4119553 Setaria italica
Seita.5G045000 1.0kb downstream 1.0kb downstream 5798 true scaffold_5: 4119554-4125351 Setaria italica
Seita.5G045000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 4124352-4125351 Setaria italica
Seita.5G045000 2.0kb upstream 2.0kb upstream 6798 true scaffold_5: 4117554-4124351 Setaria italica
Seita.5G045000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 4117554-4119553 Setaria italica
Seita.5G045000 2.0kb downstream 2.0kb downstream 6798 true scaffold_5: 4119554-4126351 Setaria italica
Seita.5G045000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 4124352-4126351 Setaria italica
Seita.5G045000 5.0kb upstream 5.0kb upstream 9798 true scaffold_5: 4114554-4124351 Setaria italica
Seita.5G045000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 4114554-4119553 Setaria italica
Seita.5G045000 5.0kb downstream 5.0kb downstream 9798 true scaffold_5: 4119554-4129351 Setaria italica
Seita.5G045000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 4124352-4129351 Setaria italica
Seita.5G045000 10.0kb upstream 10.0kb upstream 14798 true scaffold_5: 4109554-4124351 Setaria italica
Seita.5G045000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 4109554-4119553 Setaria italica
Seita.5G045000 10.0kb downstream 10.0kb downstream 14798 true scaffold_5: 4119554-4134351 Setaria italica
Seita.5G045000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 4124352-4134351 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186033 5267 Panicoideae View MSA
124575530 5269 Grass View MSA
122047058 5273 Angiosperm View MSA
121346595 5274 Embryophyte View MSA
123424978 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.638       High
cufflinks 11.338       High
cufflinks 6.051        
cufflinks 6.465        
cufflinks 5.44       Low
cufflinks 12.729       High
cufflinks 6.0        
cufflinks 6.649        
cufflinks 6.792        
cufflinks 9.023        
cufflinks 9.027        
cufflinks 7.836        
cufflinks 8.592        
cufflinks 6.686        
cufflinks 9.729        
cufflinks 5.971        
cufflinks 9.57        
cufflinks 6.509        
cufflinks 4.717       Low
cufflinks 8.857        

0 Strain