Gene : Seita.5G056300 S. italica v2.2
Defline:  (1 of 1) PTHR12506//PTHR12506:SF26 - PROTEIN PHOSPHATASE RELATED Genomic Order:  563
Name:  ? Seita.5G056300 Secondary Identifier:  ? PAC:32684503
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G056300 0.5kb upstream 0.5kb upstream 6352 true scaffold_5: 5066893-5073244 Setaria italica
Seita.5G056300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 5066893-5067392 Setaria italica
Seita.5G056300 0.5kb downstream 0.5kb downstream 6352 true scaffold_5: 5067393-5073744 Setaria italica
Seita.5G056300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 5073245-5073744 Setaria italica
Seita.5G056300 1.0kb upstream 1.0kb upstream 6852 true scaffold_5: 5066393-5073244 Setaria italica
Seita.5G056300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 5066393-5067392 Setaria italica
Seita.5G056300 1.0kb downstream 1.0kb downstream 6852 true scaffold_5: 5067393-5074244 Setaria italica
Seita.5G056300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 5073245-5074244 Setaria italica
Seita.5G056300 2.0kb upstream 2.0kb upstream 7852 true scaffold_5: 5065393-5073244 Setaria italica
Seita.5G056300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 5065393-5067392 Setaria italica
Seita.5G056300 2.0kb downstream 2.0kb downstream 7852 true scaffold_5: 5067393-5075244 Setaria italica
Seita.5G056300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 5073245-5075244 Setaria italica
Seita.5G056300 5.0kb upstream 5.0kb upstream 10852 true scaffold_5: 5062393-5073244 Setaria italica
Seita.5G056300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 5062393-5067392 Setaria italica
Seita.5G056300 5.0kb downstream 5.0kb downstream 10852 true scaffold_5: 5067393-5078244 Setaria italica
Seita.5G056300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 5073245-5078244 Setaria italica
Seita.5G056300 10.0kb upstream 10.0kb upstream 15852 true scaffold_5: 5057393-5073244 Setaria italica
Seita.5G056300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 5057393-5067392 Setaria italica
Seita.5G056300 10.0kb downstream 10.0kb downstream 15852 true scaffold_5: 5067393-5083244 Setaria italica
Seita.5G056300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 5073245-5083244 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180395 5267 Panicoideae View MSA
124588177 5269 Grass View MSA
122047734 5273 Angiosperm View MSA
121348027 5274 Embryophyte View MSA
123428726 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.397     High  
cufflinks 19.348     High High
cufflinks 10.279        
cufflinks 11.534     High  
cufflinks 8.713       Low
cufflinks 17.982     High High
cufflinks 12.947        
cufflinks 7.956       Low
cufflinks 8.94       Low
cufflinks 9.136        
cufflinks 10.114        
cufflinks 13.802     High  
cufflinks 11.471        
cufflinks 10.528        
cufflinks 10.422        
cufflinks 11.933     High  
cufflinks 10.542        
cufflinks 23.088     High High
cufflinks 11.699     High  
cufflinks 10.362        

0 Strain