Gene : Seita.5G061900 S. italica v2.2
Defline:  (1 of 1) PTHR11353:SF23 - T-COMPLEX PROTEIN 1 SUBUNIT BETA Genomic Order:  619
Name:  ? Seita.5G061900 Secondary Identifier:  ? PAC:32682520
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G061900 0.5kb upstream 0.5kb upstream 5190 true scaffold_5: 5416927-5422116 Setaria italica
Seita.5G061900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 5421617-5422116 Setaria italica
Seita.5G061900 0.5kb downstream 0.5kb downstream 5190 true scaffold_5: 5416427-5421616 Setaria italica
Seita.5G061900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 5416427-5416926 Setaria italica
Seita.5G061900 1.0kb upstream 1.0kb upstream 5690 true scaffold_5: 5416927-5422616 Setaria italica
Seita.5G061900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 5421617-5422616 Setaria italica
Seita.5G061900 1.0kb downstream 1.0kb downstream 5690 true scaffold_5: 5415927-5421616 Setaria italica
Seita.5G061900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 5415927-5416926 Setaria italica
Seita.5G061900 2.0kb upstream 2.0kb upstream 6690 true scaffold_5: 5416927-5423616 Setaria italica
Seita.5G061900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 5421617-5423616 Setaria italica
Seita.5G061900 2.0kb downstream 2.0kb downstream 6690 true scaffold_5: 5414927-5421616 Setaria italica
Seita.5G061900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 5414927-5416926 Setaria italica
Seita.5G061900 5.0kb upstream 5.0kb upstream 9690 true scaffold_5: 5416927-5426616 Setaria italica
Seita.5G061900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 5421617-5426616 Setaria italica
Seita.5G061900 5.0kb downstream 5.0kb downstream 9690 true scaffold_5: 5411927-5421616 Setaria italica
Seita.5G061900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 5411927-5416926 Setaria italica
Seita.5G061900 10.0kb upstream 10.0kb upstream 14690 true scaffold_5: 5416927-5431616 Setaria italica
Seita.5G061900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 5421617-5431616 Setaria italica
Seita.5G061900 10.0kb downstream 10.0kb downstream 14690 true scaffold_5: 5406927-5421616 Setaria italica
Seita.5G061900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 5406927-5416926 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190623 5267 Panicoideae View MSA
124571728 5269 Grass View MSA
122042218 5273 Angiosperm View MSA
121346616 5274 Embryophyte View MSA
123426772 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 48.055     High  
cufflinks 53.82     High  
cufflinks 32.202     High  
cufflinks 25.485     High Low
cufflinks 24.384     High Low
cufflinks 60.427     High High
cufflinks 34.746     High  
cufflinks 42.221     High  
cufflinks 43.804     High  
cufflinks 46.754     High  
cufflinks 48.004     High  
cufflinks 42.036     High  
cufflinks 34.892     High  
cufflinks 37.273     High  
cufflinks 53.058     High  
cufflinks 31.409     High  
cufflinks 54.314     High High
cufflinks 47.366     High  
cufflinks 23.181     High Low
cufflinks 57.366     High High

0 Strain