Gene : Seita.5G065100 S. italica v2.2
Defline:  (1 of 5) PF07889 - Protein of unknown function (DUF1664) (DUF1664) Genomic Order:  651
Name:  ? Seita.5G065100 Secondary Identifier:  ? PAC:32683956
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G065100 0.5kb upstream 0.5kb upstream 5424 true scaffold_5: 5650270-5655693 Setaria italica
Seita.5G065100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 5650270-5650769 Setaria italica
Seita.5G065100 0.5kb downstream 0.5kb downstream 5424 true scaffold_5: 5650770-5656193 Setaria italica
Seita.5G065100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 5655694-5656193 Setaria italica
Seita.5G065100 1.0kb upstream 1.0kb upstream 5924 true scaffold_5: 5649770-5655693 Setaria italica
Seita.5G065100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 5649770-5650769 Setaria italica
Seita.5G065100 1.0kb downstream 1.0kb downstream 5924 true scaffold_5: 5650770-5656693 Setaria italica
Seita.5G065100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 5655694-5656693 Setaria italica
Seita.5G065100 2.0kb upstream 2.0kb upstream 6924 true scaffold_5: 5648770-5655693 Setaria italica
Seita.5G065100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 5648770-5650769 Setaria italica
Seita.5G065100 2.0kb downstream 2.0kb downstream 6924 true scaffold_5: 5650770-5657693 Setaria italica
Seita.5G065100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 5655694-5657693 Setaria italica
Seita.5G065100 5.0kb upstream 5.0kb upstream 9924 true scaffold_5: 5645770-5655693 Setaria italica
Seita.5G065100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 5645770-5650769 Setaria italica
Seita.5G065100 5.0kb downstream 5.0kb downstream 9924 true scaffold_5: 5650770-5660693 Setaria italica
Seita.5G065100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 5655694-5660693 Setaria italica
Seita.5G065100 10.0kb upstream 10.0kb upstream 14924 true scaffold_5: 5640770-5655693 Setaria italica
Seita.5G065100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 5640770-5650769 Setaria italica
Seita.5G065100 10.0kb downstream 10.0kb downstream 14924 true scaffold_5: 5650770-5665693 Setaria italica
Seita.5G065100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 5655694-5665693 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197334 5267 Panicoideae View MSA
124580264 5269 Grass View MSA
122042412 5273 Angiosperm View MSA
121350785 5274 Embryophyte View MSA
123428058 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.959        
cufflinks 10.966        
cufflinks 8.443        
cufflinks 8.371        
cufflinks 8.647        
cufflinks 13.423     High High
cufflinks 8.41        
cufflinks 10.63        
cufflinks 9.354        
cufflinks 7.817       Low
cufflinks 7.483       Low
cufflinks 12.789       High
cufflinks 10.534        
cufflinks 8.9        
cufflinks 9.269        
cufflinks 9.36        
cufflinks 13.799       High
cufflinks 10.299        
cufflinks 9.104        
cufflinks 10.941        

0 Strain