Gene : Seita.5G072300 S. italica v2.2
Defline:  (1 of 1) PTHR11062:SF59 - EXOSTOSIN FAMILY PROTEIN Genomic Order:  723
Name:  ? Seita.5G072300 Secondary Identifier:  ? PAC:32686077
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5980 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G072300 0.5kb upstream 0.5kb upstream 4668 true scaffold_5: 6188993-6193660 Setaria italica
Seita.5G072300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 6188993-6189492 Setaria italica
Seita.5G072300 0.5kb downstream 0.5kb downstream 4668 true scaffold_5: 6189493-6194160 Setaria italica
Seita.5G072300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 6193661-6194160 Setaria italica
Seita.5G072300 1.0kb upstream 1.0kb upstream 5168 true scaffold_5: 6188493-6193660 Setaria italica
Seita.5G072300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 6188493-6189492 Setaria italica
Seita.5G072300 1.0kb downstream 1.0kb downstream 5168 true scaffold_5: 6189493-6194660 Setaria italica
Seita.5G072300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 6193661-6194660 Setaria italica
Seita.5G072300 2.0kb upstream 2.0kb upstream 6168 true scaffold_5: 6187493-6193660 Setaria italica
Seita.5G072300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 6187493-6189492 Setaria italica
Seita.5G072300 2.0kb downstream 2.0kb downstream 6168 true scaffold_5: 6189493-6195660 Setaria italica
Seita.5G072300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 6193661-6195660 Setaria italica
Seita.5G072300 5.0kb upstream 5.0kb upstream 9168 true scaffold_5: 6184493-6193660 Setaria italica
Seita.5G072300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 6184493-6189492 Setaria italica
Seita.5G072300 5.0kb downstream 5.0kb downstream 9168 true scaffold_5: 6189493-6198660 Setaria italica
Seita.5G072300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 6193661-6198660 Setaria italica
Seita.5G072300 10.0kb upstream 10.0kb upstream 14168 true scaffold_5: 6179493-6193660 Setaria italica
Seita.5G072300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 6179493-6189492 Setaria italica
Seita.5G072300 10.0kb downstream 10.0kb downstream 14168 true scaffold_5: 6189493-6203660 Setaria italica
Seita.5G072300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 6193661-6203660 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186280 5267 Panicoideae View MSA
124573490 5269 Grass View MSA
122046187 5273 Angiosperm View MSA
121349832 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.539        
cufflinks 0.913       High
cufflinks 0.066     Low Low
cufflinks 0.045     Low Low
cufflinks 0.168        
cufflinks 0.867       High
cufflinks 0.474        
cufflinks 0.472        
cufflinks 0.408        
cufflinks 0.438        
cufflinks 0.599        
cufflinks 0.251        
cufflinks 0.123     Low  
cufflinks 0.037     Low Low
cufflinks 0.271        
cufflinks 0.332        
cufflinks 0.228        
cufflinks 0.251        
cufflinks 0.029     Low Low
cufflinks 0.26        

0 Strain