Gene : Seita.5G170400 S. italica v2.2
Defline:  (1 of 1) PTHR12964 - NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT Genomic Order:  1704
Name:  ? Seita.5G170400 Secondary Identifier:  ? PAC:32684399
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-4302 Setaria italica pathologic  
Sitalica PWY-5083 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G170400 0.5kb upstream 0.5kb upstream 4077 true scaffold_5: 17147690-17151766 Setaria italica
Seita.5G170400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 17147690-17148189 Setaria italica
Seita.5G170400 0.5kb downstream 0.5kb downstream 4077 true scaffold_5: 17148190-17152266 Setaria italica
Seita.5G170400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 17151767-17152266 Setaria italica
Seita.5G170400 1.0kb upstream 1.0kb upstream 4577 true scaffold_5: 17147190-17151766 Setaria italica
Seita.5G170400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 17147190-17148189 Setaria italica
Seita.5G170400 1.0kb downstream 1.0kb downstream 4577 true scaffold_5: 17148190-17152766 Setaria italica
Seita.5G170400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 17151767-17152766 Setaria italica
Seita.5G170400 2.0kb upstream 2.0kb upstream 5577 true scaffold_5: 17146190-17151766 Setaria italica
Seita.5G170400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 17146190-17148189 Setaria italica
Seita.5G170400 2.0kb downstream 2.0kb downstream 5577 true scaffold_5: 17148190-17153766 Setaria italica
Seita.5G170400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 17151767-17153766 Setaria italica
Seita.5G170400 5.0kb upstream 5.0kb upstream 8577 true scaffold_5: 17143190-17151766 Setaria italica
Seita.5G170400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 17143190-17148189 Setaria italica
Seita.5G170400 5.0kb downstream 5.0kb downstream 8577 true scaffold_5: 17148190-17156766 Setaria italica
Seita.5G170400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 17151767-17156766 Setaria italica
Seita.5G170400 10.0kb upstream 10.0kb upstream 13577 true scaffold_5: 17138190-17151766 Setaria italica
Seita.5G170400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 17138190-17148189 Setaria italica
Seita.5G170400 10.0kb downstream 10.0kb downstream 13577 true scaffold_5: 17148190-17161766 Setaria italica
Seita.5G170400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 17151767-17161766 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041345 5273 Angiosperm View MSA
122182296 5267 Panicoideae View MSA
124583150 5269 Grass View MSA
121345950 5274 Embryophyte View MSA
123424820 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.318        
cufflinks 21.654     High  
cufflinks 10.307        
cufflinks 12.938     High  
cufflinks 12.165     High  
cufflinks 20.503     High  
cufflinks 11.541        
cufflinks 33.394     High High
cufflinks 20.033     High  
cufflinks 32.367     High High
cufflinks 18.405     High  
cufflinks 19.552     High  
cufflinks 26.41     High  
cufflinks 15.121     High  
cufflinks 19.544     High  
cufflinks 6.406       Low
cufflinks 28.804     High High
cufflinks 4.218       Low
cufflinks 13.421     High  
cufflinks 27.261     High  

0 Strain