Gene : Seita.5G176600 S. italica v2.2
Genomic Order:  1766 Name:  ? Seita.5G176600
Secondary Identifier:  ? PAC:32685002
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G176600 0.5kb upstream 0.5kb upstream 3919 true scaffold_5: 19573857-19577775 Setaria italica
Seita.5G176600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 19577276-19577775 Setaria italica
Seita.5G176600 0.5kb downstream 0.5kb downstream 3919 true scaffold_5: 19573357-19577275 Setaria italica
Seita.5G176600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 19573357-19573856 Setaria italica
Seita.5G176600 1.0kb upstream 1.0kb upstream 4419 true scaffold_5: 19573857-19578275 Setaria italica
Seita.5G176600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 19577276-19578275 Setaria italica
Seita.5G176600 1.0kb downstream 1.0kb downstream 4419 true scaffold_5: 19572857-19577275 Setaria italica
Seita.5G176600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 19572857-19573856 Setaria italica
Seita.5G176600 2.0kb upstream 2.0kb upstream 5419 true scaffold_5: 19573857-19579275 Setaria italica
Seita.5G176600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 19577276-19579275 Setaria italica
Seita.5G176600 2.0kb downstream 2.0kb downstream 5419 true scaffold_5: 19571857-19577275 Setaria italica
Seita.5G176600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 19571857-19573856 Setaria italica
Seita.5G176600 5.0kb upstream 5.0kb upstream 8419 true scaffold_5: 19573857-19582275 Setaria italica
Seita.5G176600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 19577276-19582275 Setaria italica
Seita.5G176600 5.0kb downstream 5.0kb downstream 8419 true scaffold_5: 19568857-19577275 Setaria italica
Seita.5G176600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 19568857-19573856 Setaria italica
Seita.5G176600 10.0kb upstream 10.0kb upstream 13419 true scaffold_5: 19573857-19587275 Setaria italica
Seita.5G176600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 19577276-19587275 Setaria italica
Seita.5G176600 10.0kb downstream 10.0kb downstream 13419 true scaffold_5: 19563857-19577275 Setaria italica
Seita.5G176600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 19563857-19573856 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193231 5267 Panicoideae View MSA
124466475 5269 Grass View MSA
122049048 5273 Angiosperm View MSA
121351117 5274 Embryophyte View MSA
123382012 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.176        
cufflinks 0.457        
cufflinks 0.003     Low Low
cufflinks 0.006     Low Low
cufflinks 0.003     Low Low
cufflinks 0.444        
cufflinks 0.257        
cufflinks 0.56        
cufflinks 0.186        
cufflinks 0.173     Low  
cufflinks 0.258        
cufflinks 0.382        
cufflinks 0.151     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.513        
cufflinks 0.016     Low  
cufflinks 0.555        
cufflinks 0.011     Low Low
cufflinks 0.002     Low Low
cufflinks 0.645        

0 Strain