Gene : Seita.5G183700 S. italica v2.2
Defline:  (1 of 4) PTHR24078:SF261 - DNAJ (HSP40) HOMOLOG, SUBFAMILY A, MEMBER 3A Genomic Order:  1837
Name:  ? Seita.5G183700 Secondary Identifier:  ? PAC:32681589
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G183700 0.5kb upstream 0.5kb upstream 3346 true scaffold_5: 23306771-23310116 Setaria italica
Seita.5G183700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 23306771-23307270 Setaria italica
Seita.5G183700 0.5kb downstream 0.5kb downstream 3346 true scaffold_5: 23307271-23310616 Setaria italica
Seita.5G183700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 23310117-23310616 Setaria italica
Seita.5G183700 1.0kb upstream 1.0kb upstream 3846 true scaffold_5: 23306271-23310116 Setaria italica
Seita.5G183700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 23306271-23307270 Setaria italica
Seita.5G183700 1.0kb downstream 1.0kb downstream 3846 true scaffold_5: 23307271-23311116 Setaria italica
Seita.5G183700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 23310117-23311116 Setaria italica
Seita.5G183700 2.0kb upstream 2.0kb upstream 4846 true scaffold_5: 23305271-23310116 Setaria italica
Seita.5G183700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 23305271-23307270 Setaria italica
Seita.5G183700 2.0kb downstream 2.0kb downstream 4846 true scaffold_5: 23307271-23312116 Setaria italica
Seita.5G183700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 23310117-23312116 Setaria italica
Seita.5G183700 5.0kb upstream 5.0kb upstream 7846 true scaffold_5: 23302271-23310116 Setaria italica
Seita.5G183700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 23302271-23307270 Setaria italica
Seita.5G183700 5.0kb downstream 5.0kb downstream 7846 true scaffold_5: 23307271-23315116 Setaria italica
Seita.5G183700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 23310117-23315116 Setaria italica
Seita.5G183700 10.0kb upstream 10.0kb upstream 12846 true scaffold_5: 23297271-23310116 Setaria italica
Seita.5G183700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 23297271-23307270 Setaria italica
Seita.5G183700 10.0kb downstream 10.0kb downstream 12846 true scaffold_5: 23307271-23320116 Setaria italica
Seita.5G183700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 23310117-23320116 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192140 5267 Panicoideae View MSA
124570180 5269 Grass View MSA
122045009 5273 Angiosperm View MSA
121349410 5274 Embryophyte View MSA
123426863 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.201        
cufflinks 3.902        
cufflinks 1.497       Low
cufflinks 1.88        
cufflinks 4.937       High
cufflinks 4.698        
cufflinks 3.479        
cufflinks 6.426       High
cufflinks 4.626        
cufflinks 5.578       High
cufflinks 1.74        
cufflinks 2.734        
cufflinks 3.274        
cufflinks 2.129        
cufflinks 0.759       Low
cufflinks 3.368        
cufflinks 2.429        
cufflinks 3.37        
cufflinks 1.804        
cufflinks 1.388       Low

0 Strain