Gene : Seita.5G189900 S. italica v2.2
Defline:  (1 of 2) PTHR13018//PTHR13018:SF48 - PROBABLE MEMBRANE PROTEIN DUF221-RELATED Genomic Order:  1899
Name:  ? Seita.5G189900 Secondary Identifier:  ? PAC:32685305
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G189900 0.5kb upstream 0.5kb upstream 11203 true scaffold_5: 24278391-24289593 Setaria italica
Seita.5G189900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 24289094-24289593 Setaria italica
Seita.5G189900 0.5kb downstream 0.5kb downstream 11203 true scaffold_5: 24277891-24289093 Setaria italica
Seita.5G189900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 24277891-24278390 Setaria italica
Seita.5G189900 1.0kb upstream 1.0kb upstream 11703 true scaffold_5: 24278391-24290093 Setaria italica
Seita.5G189900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 24289094-24290093 Setaria italica
Seita.5G189900 1.0kb downstream 1.0kb downstream 11703 true scaffold_5: 24277391-24289093 Setaria italica
Seita.5G189900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 24277391-24278390 Setaria italica
Seita.5G189900 2.0kb upstream 2.0kb upstream 12703 true scaffold_5: 24278391-24291093 Setaria italica
Seita.5G189900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 24289094-24291093 Setaria italica
Seita.5G189900 2.0kb downstream 2.0kb downstream 12703 true scaffold_5: 24276391-24289093 Setaria italica
Seita.5G189900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 24276391-24278390 Setaria italica
Seita.5G189900 5.0kb upstream 5.0kb upstream 15703 true scaffold_5: 24278391-24294093 Setaria italica
Seita.5G189900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 24289094-24294093 Setaria italica
Seita.5G189900 5.0kb downstream 5.0kb downstream 15703 true scaffold_5: 24273391-24289093 Setaria italica
Seita.5G189900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 24273391-24278390 Setaria italica
Seita.5G189900 10.0kb upstream 10.0kb upstream 20703 true scaffold_5: 24278391-24299093 Setaria italica
Seita.5G189900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 24289094-24299093 Setaria italica
Seita.5G189900 10.0kb downstream 10.0kb downstream 20703 true scaffold_5: 24268391-24289093 Setaria italica
Seita.5G189900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 24268391-24278390 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181639 5267 Panicoideae View MSA
124579853 5269 Grass View MSA
122047982 5273 Angiosperm View MSA
123429118 5275 Viridiplantae View MSA
121350338 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.922        
cufflinks 24.098     High High
cufflinks 20.42     High  
cufflinks 12.149     High  
cufflinks 12.638     High  
cufflinks 24.433     High High
cufflinks 16.231     High  
cufflinks 16.414     High  
cufflinks 15.335     High  
cufflinks 5.225       Low
cufflinks 17.649     High  
cufflinks 13.479        
cufflinks 14.633     High  
cufflinks 29.68     High High
cufflinks 16.592     High  
cufflinks 9.285        
cufflinks 16.938     High  
cufflinks 7.371       Low
cufflinks 7.103       Low
cufflinks 15.393     High  

0 Strain