Gene : Seita.5G201800 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2018
Name:  ? Seita.5G201800 Secondary Identifier:  ? PAC:32684624
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G201800 0.5kb upstream 0.5kb upstream 7633 true scaffold_5: 25904814-25912446 Setaria italica
Seita.5G201800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 25904814-25905313 Setaria italica
Seita.5G201800 0.5kb downstream 0.5kb downstream 7633 true scaffold_5: 25905314-25912946 Setaria italica
Seita.5G201800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 25912447-25912946 Setaria italica
Seita.5G201800 1.0kb upstream 1.0kb upstream 8133 true scaffold_5: 25904314-25912446 Setaria italica
Seita.5G201800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 25904314-25905313 Setaria italica
Seita.5G201800 1.0kb downstream 1.0kb downstream 8133 true scaffold_5: 25905314-25913446 Setaria italica
Seita.5G201800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 25912447-25913446 Setaria italica
Seita.5G201800 2.0kb upstream 2.0kb upstream 9133 true scaffold_5: 25903314-25912446 Setaria italica
Seita.5G201800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 25903314-25905313 Setaria italica
Seita.5G201800 2.0kb downstream 2.0kb downstream 9133 true scaffold_5: 25905314-25914446 Setaria italica
Seita.5G201800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 25912447-25914446 Setaria italica
Seita.5G201800 5.0kb upstream 5.0kb upstream 12133 true scaffold_5: 25900314-25912446 Setaria italica
Seita.5G201800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 25900314-25905313 Setaria italica
Seita.5G201800 5.0kb downstream 5.0kb downstream 12133 true scaffold_5: 25905314-25917446 Setaria italica
Seita.5G201800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 25912447-25917446 Setaria italica
Seita.5G201800 10.0kb upstream 10.0kb upstream 17133 true scaffold_5: 25895314-25912446 Setaria italica
Seita.5G201800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 25895314-25905313 Setaria italica
Seita.5G201800 10.0kb downstream 10.0kb downstream 17133 true scaffold_5: 25905314-25922446 Setaria italica
Seita.5G201800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 25912447-25922446 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041312 5273 Angiosperm View MSA
122183202 5267 Panicoideae View MSA
124579827 5269 Grass View MSA
121347674 5274 Embryophyte View MSA
123380597 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.646        
cufflinks 2.033        
cufflinks 2.279        
cufflinks 1.794        
cufflinks 2.063        
cufflinks 2.372        
cufflinks 2.263        
cufflinks 3.154       High
cufflinks 3.884       High
cufflinks 0.696       Low
cufflinks 1.037       Low
cufflinks 1.577        
cufflinks 1.265        
cufflinks 3.055       High
cufflinks 1.344        
cufflinks 1.652        
cufflinks 1.295        
cufflinks 1.586        
cufflinks 1.908        
cufflinks 1.358        

0 Strain