Gene : Seita.5G128700 S. italica v2.2
Genomic Order:  1287 Name:  ? Seita.5G128700
Secondary Identifier:  ? PAC:32684699
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G128700 0.5kb upstream 0.5kb upstream 5502 true scaffold_5: 11020888-11026389 Setaria italica
Seita.5G128700 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11025890-11026389 Setaria italica
Seita.5G128700 0.5kb downstream 0.5kb downstream 5502 true scaffold_5: 11020388-11025889 Setaria italica
Seita.5G128700 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11020388-11020887 Setaria italica
Seita.5G128700 1.0kb upstream 1.0kb upstream 6002 true scaffold_5: 11020888-11026889 Setaria italica
Seita.5G128700 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11025890-11026889 Setaria italica
Seita.5G128700 1.0kb downstream 1.0kb downstream 6002 true scaffold_5: 11019888-11025889 Setaria italica
Seita.5G128700 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11019888-11020887 Setaria italica
Seita.5G128700 2.0kb upstream 2.0kb upstream 7002 true scaffold_5: 11020888-11027889 Setaria italica
Seita.5G128700 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11025890-11027889 Setaria italica
Seita.5G128700 2.0kb downstream 2.0kb downstream 7002 true scaffold_5: 11018888-11025889 Setaria italica
Seita.5G128700 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11018888-11020887 Setaria italica
Seita.5G128700 5.0kb upstream 5.0kb upstream 10002 true scaffold_5: 11020888-11030889 Setaria italica
Seita.5G128700 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11025890-11030889 Setaria italica
Seita.5G128700 5.0kb downstream 5.0kb downstream 10002 true scaffold_5: 11015888-11025889 Setaria italica
Seita.5G128700 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11015888-11020887 Setaria italica
Seita.5G128700 10.0kb upstream 10.0kb upstream 15002 true scaffold_5: 11020888-11035889 Setaria italica
Seita.5G128700 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11025890-11035889 Setaria italica
Seita.5G128700 10.0kb downstream 10.0kb downstream 15002 true scaffold_5: 11010888-11025889 Setaria italica
Seita.5G128700 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11010888-11020887 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184334 5267 Panicoideae View MSA
124569161 5269 Grass View MSA
122050124 5273 Angiosperm View MSA
121311754 5274 Embryophyte View MSA
123349009 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.757       Low
cufflinks 1.913       High
cufflinks 1.978       High
cufflinks 1.502        
cufflinks 0.926        
cufflinks 1.701        
cufflinks 1.068        
cufflinks 1.377        
cufflinks 0.779       Low
cufflinks 0.972        
cufflinks 1.027        
cufflinks 1.826       High
cufflinks 0.885       Low
cufflinks 2.153       High
cufflinks 1.388        
cufflinks 1.06        
cufflinks 1.493        
cufflinks 0.984        
cufflinks 1.566        
cufflinks 1.41        

0 Strain