Gene : Seita.5G136800 S. italica v2.2
Defline:  (1 of 1) 2.1.1.190 - 23S rRNA (uracil(1939)-C(5))-methyltransferase / RNA uridine methyltransferase A Genomic Order:  1368
Name:  ? Seita.5G136800 Secondary Identifier:  ? PAC:32682616
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G136800 0.5kb upstream 0.5kb upstream 10495 true scaffold_5: 11983772-11994266 Setaria italica
Seita.5G136800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 11993767-11994266 Setaria italica
Seita.5G136800 0.5kb downstream 0.5kb downstream 10495 true scaffold_5: 11983272-11993766 Setaria italica
Seita.5G136800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 11983272-11983771 Setaria italica
Seita.5G136800 1.0kb upstream 1.0kb upstream 10995 true scaffold_5: 11983772-11994766 Setaria italica
Seita.5G136800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 11993767-11994766 Setaria italica
Seita.5G136800 1.0kb downstream 1.0kb downstream 10995 true scaffold_5: 11982772-11993766 Setaria italica
Seita.5G136800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 11982772-11983771 Setaria italica
Seita.5G136800 2.0kb upstream 2.0kb upstream 11995 true scaffold_5: 11983772-11995766 Setaria italica
Seita.5G136800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 11993767-11995766 Setaria italica
Seita.5G136800 2.0kb downstream 2.0kb downstream 11995 true scaffold_5: 11981772-11993766 Setaria italica
Seita.5G136800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 11981772-11983771 Setaria italica
Seita.5G136800 5.0kb upstream 5.0kb upstream 14995 true scaffold_5: 11983772-11998766 Setaria italica
Seita.5G136800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 11993767-11998766 Setaria italica
Seita.5G136800 5.0kb downstream 5.0kb downstream 14995 true scaffold_5: 11978772-11993766 Setaria italica
Seita.5G136800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 11978772-11983771 Setaria italica
Seita.5G136800 10.0kb upstream 10.0kb upstream 19995 true scaffold_5: 11983772-12003766 Setaria italica
Seita.5G136800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 11993767-12003766 Setaria italica
Seita.5G136800 10.0kb downstream 10.0kb downstream 19995 true scaffold_5: 11973772-11993766 Setaria italica
Seita.5G136800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 11973772-11983771 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184855 5267 Panicoideae View MSA
124574182 5269 Grass View MSA
122042152 5273 Angiosperm View MSA
121345091 5274 Embryophyte View MSA
123424748 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.984        
cufflinks 2.713        
cufflinks 2.085        
cufflinks 0.999       Low
cufflinks 2.102        
cufflinks 3.075        
cufflinks 3.688       High
cufflinks 3.663       High
cufflinks 5.908       High
cufflinks 1.587        
cufflinks 2.062        
cufflinks 1.243        
cufflinks 0.747       Low
cufflinks 3.483        
cufflinks 1.338        
cufflinks 3.413        
cufflinks 1.649        
cufflinks 2.087        
cufflinks 1.415        
cufflinks 1.104       Low

0 Strain