Gene : Seita.5G143000 S. italica v2.2
Genomic Order:  1430 Name:  ? Seita.5G143000
Secondary Identifier:  ? PAC:32686415
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G143000 0.5kb upstream 0.5kb upstream 2322 true scaffold_5: 12585514-12587835 Setaria italica
Seita.5G143000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 12585514-12586013 Setaria italica
Seita.5G143000 0.5kb downstream 0.5kb downstream 2322 true scaffold_5: 12586014-12588335 Setaria italica
Seita.5G143000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 12587836-12588335 Setaria italica
Seita.5G143000 1.0kb upstream 1.0kb upstream 2822 true scaffold_5: 12585014-12587835 Setaria italica
Seita.5G143000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 12585014-12586013 Setaria italica
Seita.5G143000 1.0kb downstream 1.0kb downstream 2822 true scaffold_5: 12586014-12588835 Setaria italica
Seita.5G143000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 12587836-12588835 Setaria italica
Seita.5G143000 2.0kb upstream 2.0kb upstream 3822 true scaffold_5: 12584014-12587835 Setaria italica
Seita.5G143000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 12584014-12586013 Setaria italica
Seita.5G143000 2.0kb downstream 2.0kb downstream 3822 true scaffold_5: 12586014-12589835 Setaria italica
Seita.5G143000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 12587836-12589835 Setaria italica
Seita.5G143000 5.0kb upstream 5.0kb upstream 6822 true scaffold_5: 12581014-12587835 Setaria italica
Seita.5G143000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 12581014-12586013 Setaria italica
Seita.5G143000 5.0kb downstream 5.0kb downstream 6822 true scaffold_5: 12586014-12592835 Setaria italica
Seita.5G143000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 12587836-12592835 Setaria italica
Seita.5G143000 10.0kb upstream 10.0kb upstream 11822 true scaffold_5: 12576014-12587835 Setaria italica
Seita.5G143000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 12576014-12586013 Setaria italica
Seita.5G143000 10.0kb downstream 10.0kb downstream 11822 true scaffold_5: 12586014-12597835 Setaria italica
Seita.5G143000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 12587836-12597835 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184493 5267 Panicoideae View MSA
124585128 5269 Grass View MSA
122042133 5273 Angiosperm View MSA
121349082 5274 Embryophyte View MSA
123381156 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.481        
cufflinks 84.236     High High
cufflinks 0.01     Low Low
cufflinks 0.013     Low Low
cufflinks 0.042     Low  
cufflinks 73.074     High High
cufflinks 22.751     High  
cufflinks 23.147     High  
cufflinks 13.986     High  
cufflinks 75.119     High High
cufflinks 42.065     High High
cufflinks 0.009     Low Low
cufflinks 0.037     Low  
cufflinks 0.046     Low  
cufflinks 0.006     Low Low
cufflinks 7.107        
cufflinks 0.092     Low  
cufflinks 2.616        
cufflinks 0.109        
cufflinks 0.018     Low Low

0 Strain